Scaffold Ga0213865_10005815

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10005815
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7248
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F008595	Metagenome / Metatranscriptome	331	Y
F018155	Metagenome / Metatranscriptome	236	Y
F036651	Metagenome / Metatranscriptome	169	N
F067646	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_1000581510	F001942	N/A	VPRKTSDQHQANSRLGALGESLTQTFLLEYADFCYPTQEKHPADLMVEFGSAKYTVQVKSRRATKEKKFVFAAENSRSMSETYKHYTCDILAFVFFDEEEKRIMFKANTSSQNYFTFDKKTITESMELDSLKETLDNLSSVPALNPLI
Ga0213865_1000581514	F008595	AGGAG	MSKEENKVKEENPVIITYNDVEYRATDLNEEQMALAAKLNVAGRKLNRLQEAYDDYVITNEYKNLCIESFDRAINAEEEAEVVEEE
Ga0213865_100058152	F067646	AGGA	MLDWILYFIAGIFGLVFVGGIISVLAAIYIFNELD
Ga0213865_100058153	F018155	AGGAG	MGQNSQAVEKRRKELKAEKLDKQIKTYYFQKGAGKHYREVTYMSGKVVRTDYDA
Ga0213865_100058158	F036651	N/A	MREITLNEVGKTKPLILSKRQIRGYYRDVFTGENKVQTENREYVVRDSLTEIGYLMGVNR