Scaffold Ga0213863_10062139

Overview

Basic Information

• Taxon OID: 3300021371
• Scaffold ID: Ga0213863_10062139
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1891
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC204P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014803	Metagenome	260	Y
F020878	Metagenome	221	N
F077796	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213863_100621391	F014803	N/A	MNKEQKQIVKRINKAYSKLYILSNITWTPYRDDLFNMNKKEEKNHRNSFQGRSYNNCGSINDCARLFTVKHIAESLLNPNKWQVKDLLVIKKSCIYSQSLVNNYGDRIKKAWIDEDIKYLANLDYIALVDWDLYQKNKREVA
Ga0213863_100621394	F077796	AGG	MEYQIPCDQCDITEDESKLIETFDNQLLCSSCYVKQEFKIESEGE
Ga0213863_100621396	F020878	GGGGG	MFIRLFGKEITINNKKWKQDLLAWSLLYRTEIVIAIASFILGAIIF