NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213863_10036666

Scaffold Ga0213863_10036666


Overview

Basic Information
Taxon OID3300021371 Open in IMG/M
Scaffold IDGa0213863_10036666 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2654
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003976Metagenome / Metatranscriptome459Y
F010318Metagenome / Metatranscriptome305Y
F010532Metagenome302N
F051564Metagenome144Y
F067760Metagenome / Metatranscriptome125N
F087019Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0213863_1003666610F087019AGGAMIGDIIGLGLVILFMLVSLTAVGFIIADSNYDKKRKDD
Ga0213863_100366662F051564GGAGGMSIPKQMIKEWCETYDEAIETLDYLANRSVGTAKEEIKESLEDFFIDNGLMSEEEFKQEVEE
Ga0213863_100366663F003976AGGAGGMSRVYNDYYFEKQDILDTLEKLEISVRLLNVWVNEPMGFENAKYLLEKNANQKFDWFSRDMVKELVEEETYET
Ga0213863_100366665F010318AGGAGMNVDSDKPRYLECIYEAPITFDLEELGIDWENVKDYYIKYGTLYVEFKDGTSESYYNGDVGETDYKWAVRESILTENYDLVEGLN
Ga0213863_100366666F010532GGAGGMNRTLYKKLEDICAREYILNKLSSNKFRTFVDFLYDDIRTWDKPMEVSEVDIIHRIEEHMSYMVSSYLTKSYEGISMDEQFITGA
Ga0213863_100366667F067760N/AMKIRRIDMYIMNQYKNYCDEALRYKEFQKTFQAWKEDNIVSLVKEYKEYRRLDRYGSQV
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Institute for Fundamental Biomedical Research
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