Scaffold Ga0213863_10022365

Overview

Basic Information

• Taxon OID: 3300021371
• Scaffold ID: Ga0213863_10022365
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3609
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021020	Metagenome / Metatranscriptome	221	Y
F034945	Metagenome / Metatranscriptome	173	Y
F090460	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213863_100223654	F021020	AGGAG	MSNVINLRNTVMTNNYDLNIWDRRGYETEYQEEGWAIDVYQYDYLGAPYGSGKHVPEHTITLTPTEAKRLTLGWGTDLGGDYTPDADFWLDKDSFFDTYTDIPERVANLLWALPEYSQSLEVAV
Ga0213863_100223655	F034945	GGA	MGDRANVGIRGSDRNTIFLYLHWGGADRNETVANALAHAMARDGDEAYFTRIFISRVIDRDWDKETGVGLSVNKLSAQGDGYSVPIYDYTTKKVEIHEELWDVAGGFTNHTDIEYPRDMYLAEYAVRGVGSYV
Ga0213863_100223657	F090460	AGGAG	MVNDKFSDKEYWEGIQYACEYFRDELGFEDATETSLYQQATEELALV