Scaffold Ga0213863_10000357

Overview

Basic Information

• Taxon OID: 3300021371
• Scaffold ID: Ga0213863_10000357
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35448
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (70.37%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009045	Metagenome / Metatranscriptome	324	N
F019728	Metagenome	228	Y
F030153	Metagenome / Metatranscriptome	186	Y
F033765	Metagenome	176	N
F040864	Metagenome / Metatranscriptome	161	Y
F066152	Metagenome / Metatranscriptome	127	N
F079945	Metagenome	115	N
F081762	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213863_1000035710	F040864	N/A	MEDPTKKLYDHKGWFWDHINKRMYRWHELELLMKERTLKEKKNADQLKNQRSDV
Ga0213863_1000035717	F066152	AGGA	MLFPSIPQYLCVYEIDSNLHMVVLQARNSDTAELFALLRSMEESSDYTFGKILDVSEIDPSHHISLTIH
Ga0213863_1000035730	F079945	AGG	MVEYQGKKVTVRTKVKHELSDVVIAWVNQVVKNPEDVIVDWNQMTAKEQEEFERQAFLLEGKLHKVIGVQFAEIISSNSYTKKI
Ga0213863_1000035737	F019728	N/A	MITKEELEKNDWTVVPKGVWFGVDFAESHKVNVLNILTDLLDLDTDAEGYNFVVCAYKKQETEDER
Ga0213863_1000035741	F033765	GGAGG	MKSLLRTILDECEKNKLMYRANAYDLWNNGCEDMIVPWGYDFEALTETMKAFELDERIGNIQILPESKVKTHAELIDSIRSDLLEYSFEDEERSLIENLTDEQIISEQPDEYYSGYYWIMWTNYGGNEHLDCFTDYTTSLDKYFDVSELTNDWEDQYNEFKLGLI
Ga0213863_1000035745	F009045	AGG	MNNLNDTFEASRIYRGNRHIIKDQIIQGDDYVVDGVRRSFWSNPDKSHSCHLFKMVRGEIIDRITVDSFEGETLNEFIQRTETILLGGK
Ga0213863_1000035746	F030153	AGGGGG	MSLIVDFTKIDEVAKKELNQYQEMIGYYMMAIGMGEITEKNHLEVYARLVLLQASTLDSSKPWITLRMVKGLINARFNIAFESKAKFSTRMMKATLREVERLEAKESKEVA
Ga0213863_1000035749	F081762	GGTGG	MREQLLDTLNLSIRNTPLTGGGISENPYIALSLIDRGLADTRAYAIGRALENRDLSKLASAICECDSSNFPRLVRLEPRLFELLLSDESVKGYWGVLSERLEEVMK