Scaffold Ga0213863_10000223

Overview

Basic Information

• Taxon OID: 3300021371
• Scaffold ID: Ga0213863_10000223
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44891
• Total Scaffold Genes: 107
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (27.10%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Associated Families: 14

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005287	Metagenome / Metatranscriptome	406	Y
F020156	Metagenome / Metatranscriptome	225	Y
F024089	Metagenome / Metatranscriptome	207	Y
F025258	Metagenome / Metatranscriptome	202	Y
F029108	Metagenome / Metatranscriptome	189	Y
F040577	Metagenome / Metatranscriptome	161	Y
F041707	Metagenome / Metatranscriptome	159	Y
F042280	Metagenome / Metatranscriptome	158	Y
F068602	Metagenome / Metatranscriptome	124	Y
F072343	Metagenome / Metatranscriptome	121	Y
F082523	Metagenome	113	Y
F098878	Metagenome / Metatranscriptome	103	N
F099289	Metagenome / Metatranscriptome	103	Y
F102786	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213863_1000022310	F102786	N/A	MLKGKERQIVLDCLYQESLTEAKKHTIFEVKAKMTAKLEAQLRYEHLSLRERIQIYNNFICKKITKYIADDISKSATMYWVNGTPEKRNQRIAEYARYAFTRMPENQKIAICEKLRFKYLSN
Ga0213863_1000022315	F005287	N/A	VHELASGRRIIKIKSTDIVYSEHDYDECFEYKDGSGRVADGTAIGYEHNKQIILFQDIKYSQYDHDYWNNYELEHDVDRIVIG
Ga0213863_1000022338	F024089	AGAAG	MNKLEEAIGNLNNIQENIDALIYAIGDSPQQYTEDELLNMLMGMSQLHQTWYDKLWVEYDNFRREYNAFDEDDMFDQNFLTNKKSLTKQKRKSKIEA
Ga0213863_1000022340	F099289	N/A	MITIEDANNEKFYINPVNVVYVKQRESFWKILLTTGEAIMTKNSDGAMAIVNAIKRY
Ga0213863_1000022358	F082523	N/A	MSGEAHSVFFRRTNQTEESNWELCKIFEGLIMRSPVKKHMKFYSDYVGQVHLYEKGGDDTPKWMEKDLRFDGTFQLMISTYESWYEDADIYESFDRSDSFVSLAKQFAEQYNLKYYHRGIYELEEELEKKCLTTINN
Ga0213863_1000022369	F041707	GAG	MKDYNIQLGLTHEDIMRLLSGEISSFNFIPTEDTDYDDRISISIKEVEEDATLSECMNLSVDNISAIS
Ga0213863_1000022373	F020156	N/A	MQTYRQILKEELQRLVKQESFNANHANDIIELFDDEIEDGHSDTTAYDKAMQDIDNVKNGEWDL
Ga0213863_1000022374	F042280	N/A	MGLMKIKNKWEETFEVNVGDYVGFKCDIEQIGKVKQIQTTRRAMIIENKNGFDGDYIGGDTEALVGFDEVWNEA
Ga0213863_100002238	F025258	N/A	MSEYKPKPFTKELAEQMKVAMSEPFDEKRTLCNVLKLAYRCSREESYNLQAVQALLLESLWMGQRMHSKLYDAQKQEFNNEHQQQNEDEDPFAVDWSNLDGRNVAQGNWD
Ga0213863_1000022384	F040577	N/A	MTELQRISAEIVEIFQNKISKLTKDQTEQLNIHNNSMNFYVQLGDEQKALWEAKHTLEYLEEITQ
Ga0213863_1000022385	F068602	AGGAG	MEDDDPHADEMLEKSNFIVNQLAKDIHLYSDEQIQDILLMQQSMEFFLKQDDTSKAIIECRNLYNYLSEITQ
Ga0213863_1000022386	F072343	N/A	MHIRREIDHILDDINKIIANKKTSNKESEDDKALLNHLYETINLKTDNGKRAKGMWTDSPEFVSFK
Ga0213863_1000022390	F029108	N/A	MAKQINPRKYVVGKKKSGKGKVGTKGGVATRTGAFGGISKFNRKRLDKQE
Ga0213863_1000022392	F098878	N/A	MKTKIAESEIAKSIEDYLDGCSKQELIDLHNFIFSEYISNFDDVAWGE