Scaffold Ga0213860_10004492

Overview

Basic Information

• Taxon OID: 3300021368
• Scaffold ID: Ga0213860_10004492
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5707
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010536	Metagenome / Metatranscriptome	302	N
F044516	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213860_1000449215	F044516	AGGAGG	MCRDTGYYEPRQDVATKVVEEMFEKQNKSLMIYYLKMAYQDDQHTYMNDLYWVLQNKFNDVDLEAVKQHVEELLLIDDTDKELFEEEE
Ga0213860_100044923	F010536	GAGG	MIDVMLSKATEGMLIAELLNRRNDKEVPLFMGKSILLPSGQQQLLAILPNIQILTNTQEEEE