Scaffold Ga0206123_10007198

Overview

Basic Information

• Taxon OID: 3300021365
• Scaffold ID: Ga0206123_10007198
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7977
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (91.30%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014071	Metagenome / Metatranscriptome	266	Y
F028524	Metagenome / Metatranscriptome	191	Y
F084852	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206123_1000719818	F014071	GGAGG	MATRPGRLLDKTFTSFTEASGRLEDTIGWITAAEELANEVQPGCKAEVTLHLLGKVLEEARTELDQASEDLAIEVFGK
Ga0206123_1000719819	F084852	GAGG	MRDLKKFEEDIQNILDKFQFVGETRRKIFSQLMEYASEQDKFNAEQQAGNPQKGNQND
Ga0206123_1000719820	F028524	AGG	MINTTNEFESTVKEFVNKLTTIENEMTILRQDRSELFTEMKSKLDPRSFRAAVKIHNLQKSTPDQTSLSRILEVLETAE