Scaffold Ga0213859

Basic Information
Taxon OID	3300021364 Open in IMG/M
Scaffold ID	Ga0213859_10000887 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021364 Open in IMG/M

Scaffold ID

Ga0213859_10000887 Open in IMG/M

Source Dataset Name

Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13586
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (12.50%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

13586

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (12.50%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

34.7181

Long. (^o)

-76.6707

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025731	Metagenome / Metatranscriptome	200	Y
F027834	Metagenome / Metatranscriptome	193	Y
F027835	Metagenome / Metatranscriptome	193	N
F048249	Metagenome	148	N
F055727	Metagenome / Metatranscriptome	138	Y
F072294	Metagenome / Metatranscriptome	121	Y
F082629	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213859_1000088710	F055727	N/A	MYNHFLEFSVDEMVDAYTYFTLIHDYEGCRLVGEAFDKNTSIDFQNF
Ga0213859_1000088713	F025731	N/A	MLHSTNTERKKAQMASALFNDVQLLGSAVTCTAEFDLLSCDEQMRLEDLIATA
Ga0213859_1000088728	F082629	GAG	MEKSNKIKTTQEVLQSASQSSPSGLIYWDDYNFDNQSDTTGYLKHNFRLDYTLS
Ga0213859_100008873	F048249	N/A	MKTSIFNTRIIRKGSKVLYRGSWGRDGQRIAEVIAIEQTQGPNEKYGDEVDAVGLDEHYVLTLNNGHWCYSYQVDGLVQPTENQSVAK
Ga0213859_1000088731	F072294	N/A	MPDLHCPNCGKERFERSLTMKVKDGETYYMEGQCECGAQMKLTNPKSGVANLGRMNPHGQSY
Ga0213859_100008876	F027835	N/A	MKTQRHIDALYERRKTAGGFESALIDAYMKADGGNAKLLEDAFKDTRFDLTPKPRFDYGIETLRAAVRWADMRDEGYNFDKTAEELLEEYEIWADSTEDIPADQHFLTRLQ
Ga0213859_100008879	F027834	N/A	MKNFSFDEAMCFAYGSTMLTGGSSMGIMDNREYYIPKHGYVVGGIVPEKSCDMDNESAFKHTYNRFFYQAELALERESAVVIGTWVEDGKIVFDLCNVLDDMKDALELAAKRGERAIYDLENEREIFVNHNA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213859_10000887

Overview

Ecosystem & Geography

Associated Families

Sequences