Scaffold Ga0213859

Basic Information
Taxon OID	3300021364 Open in IMG/M
Scaffold ID	Ga0213859_10000226 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021364 Open in IMG/M

Scaffold ID

Ga0213859_10000226 Open in IMG/M

Source Dataset Name

Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26003
Total Scaffold Genes	74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	37 (50.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

26003

Total Scaffold Genes

74 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

37 (50.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

34.7181

Long. (^o)

-76.6707

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007265	Metagenome / Metatranscriptome	354	Y
F008402	Metagenome / Metatranscriptome	334	Y
F032484	Metagenome / Metatranscriptome	180	Y
F068810	Metagenome / Metatranscriptome	124	Y
F072267	Metagenome / Metatranscriptome	121	Y
F073557	Metagenome / Metatranscriptome	120	Y
F080645	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213859_100002261	F080645	N/A	MNLTTEQISDLCQAHCYRVIDNMDMDDLVSYAVQMMYQSFDKNPGNGDTDVNMLIEDIWIAEGEDDDSTEEFIAGVVGSDLADEIMKNTQF
Ga0213859_1000022634	F068810	GGAG	MKEYFEGVKKRAGLIILFGQMCIIMFQLSTLNQKSVVVCEQHYHQIICREQ
Ga0213859_1000022639	F007265	N/A	MISPYKVVPGTDIVHSTTDVYELCDEAEGITYRVELQADNGGVSITYTEKKIDEKSKLFNEYMSIANKELAVVVAKRILEIYQVN
Ga0213859_1000022642	F073557	AGG	MTDEQIDTMLQMHRYLMKCEIKHAFDKFCAENGNEDYRSADLQEAFNDTKWDEFAKWLRDIRDE
Ga0213859_1000022647	F008402	N/A	MTSYTQKPLMEKVVISTQIRIQQYESYWYTVEDTHLDVGCEGFTISYWEVANEMAAYDKEKGEKRVQHICMNKEESLAIADAIYKLFKN
Ga0213859_1000022651	F072267	AGGAG	MTEKIGYKLNPEKLKKAPQYITPYVFLGAFYYTEDYEYFDVIKPYLDVPEEPKTLEEIQQEFTEKIDKQIEDVKHNFEALKYRQEYQFSKKITQIIEDIEFARKNGSFPAKLDCSKLTATGSNITSNFVIKEGGEEVGYYAFGNGYLKYYMNKKPNFIVRFCMNKLLGFRWIDT
Ga0213859_1000022668	F032484	GGAG	MKKLLIIDHLNKTIEQKRELNPPTFNAHFRDKVREQYPDYELK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213859_10000226

Overview

Ecosystem & Geography

Associated Families

Sequences