Scaffold Ga0213873_10000003

Overview

Basic Information

• Taxon OID: 3300021358
• Scaffold ID: Ga0213873_10000003
• Source Dataset Name: Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 973849
• Total Scaffold Genes: 868
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 497 (57.26%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location

• Location Name: Brazil: Minas Gerais
• Coordinates
  • Lat. (^o): -19.2822
  • Long. (^o): -43.5936

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001750	Metagenome / Metatranscriptome	642	Y
F002818	Metagenome	528	Y
F024882	Metagenome / Metatranscriptome	204	Y
F026702	Metagenome / Metatranscriptome	197	Y
F043603	Metagenome	156	Y
F048553	Metagenome	148	Y
F065095	Metagenome / Metatranscriptome	128	Y
F105755	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213873_10000003126	F105755	GAG	VRFVRLAIVATALVLLPRCTVSVSRYAFETALKNQANIDRIHIGQTLAEVEKIMGKPPERRNARVRFDGISIEEWSYLTDYVRRMDTTITFVGGKVDEIHAAGWEEE
Ga0213873_10000003391	F043603	AGGGGG	MNNAAQTRTNKLETAVSAAYALPAMLAANTVALLALDQLGGIPHWIKTAVSLFLSF
Ga0213873_10000003434	F065095	AGGAG	MAVMDEKASIEHEIARARNDFGNRIDELDRTLRTNYDPGTLARQYAPQIVAGGAVLGVIVGFGLPKVFRKLVTWGVPLAIVGMTIKNVRERKDAEEARTMVGLA
Ga0213873_10000003437	F026702	GGAG	MNFDVATITYPDGRIAKLTPAEFAAIPLGQRIELLTASRIKFEKDKQPMSPLLALKRQ
Ga0213873_1000000346	F024882	GGCGG	MRMACDHKGGPELIEMAEAHLRREGIPASQWPGLRFRWSENLDGGMWAAVIVEIERRGEQWIVTRLDRKQEPVDNAGFAAL
Ga0213873_10000003519	F048553	AGG	MMRFTIEERHLTDDHGRPVAAREAVEFHTCDAETIDDAVRVFVKEDNAEIIGSVLKFPGFQAVATVRKESGVYTLQFTPASSSGMRI
Ga0213873_10000003707	F001750	N/A	MPKVTADIPSELSRQIDRIIRDGWYPDAETVVREALHQFVDAKSFLGDSPRMLHRFAADALNDSKPEVALKFVTRAVSLLANQSVTDFTLYQALVELRVQILLVLGREDDALVSLEEAREKLPNNPTVARWISRLEKNKPRGEA
Ga0213873_10000003754	F002818	N/A	MPTEVEQSRELARAFWAGKPIACPRHPGATLTGSFVQTTFADHIFLTCSRGKETLTIPQRPKQMEFYDQQVEGFVENLQRGDAILCYRCQAKMETAAKENPETGVTDYTFTCTRCFSWGRWVGKPELAKIGKD