Scaffold Ga0213858_10015899

Overview

Basic Information

• Taxon OID: 3300021356
• Scaffold ID: Ga0213858_10015899
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3569
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F010532	Metagenome	302	N
F010571	Metagenome	302	Y
F038195	Metagenome	166	Y
F051564	Metagenome	144	Y
F087019	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213858_1001589910	F010571	AGGAGG	MSMNTRQAIYIENLYEGFYEKHYKELSKTSDDVEWIENEASRLAEIDLDNFEMEG
Ga0213858_1001589911	F038195	AGGAGG	MKLHKDYYEYKTISFSFFKKVANKNEFKREWVTVRCQEDIMKQQPQNVQIRRLKKNV
Ga0213858_100158993	F087019	AGGAGG	MISELIGLGFVILFMLVSLTAVGFIIADSDYDKKRKDD
Ga0213858_100158997	F010532	AGGAGG	MNRTLYKKLEDICAREYILNKLSSNKFRTFVDFLYDDIRTWDKPMEVSEVDIIHRIEEHMSYMVSSYLTKSYEGIGIEQEALKQA
Ga0213858_100158998	F003976	AGGAGG	MSRVYNDYYFEKQDILDTLEKLEISVRLLNVWVNEPMGFENAKYLLEKNANQKFDWFSRDMVKELVEEESK
Ga0213858_100158999	F051564	GGAGG	MSIPKQMIREWCETYEEAIETLDYLANRSVGTAKEEIREGLEDFFIDNGLMSEEEFKQEVENE