Scaffold Ga0213858_10010252

Overview

Basic Information

• Taxon OID: 3300021356
• Scaffold ID: Ga0213858_10010252
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4425
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018286	Metagenome	236	Y
F030886	Metagenome	184	Y
F041168	Metagenome	160	Y
F053549	Metagenome	141	Y
F059942	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213858_1001025210	F030886	AGGA	MSYHDGIPPQYSTTGIGVVNPLRQIEMKLKKIQDVLDNISDSSVLTANDLKAKLLKVIDD
Ga0213858_1001025212	F018286	GGAG	MNMLTTFVLMGVIDSHDGVFATVELNTNPASNGGPATAVMPVAAFPCEISEGKVFFVVKMHEHQDAEIICQEEEKNENQPDPPDSCMH
Ga0213858_1001025215	F059942	GGAGG	VKAGDLISFKPINFGLEDWSNPSIVVSEYESPNEGLWAIWCDGVYCVIDDENYEIVYLTS
Ga0213858_1001025217	F053549	GGA	MKVGDLVKWENVLNDSMDHYRIDYGVVIKMSKTGHTTHSAQVLFNDGELAWFDTQQLIVVSPH
Ga0213858_100102527	F041168	GAG	MKQAKVRRHTVGFFRNDAEVPFINLEMFETITAATSIPHYWRDSDGKVSQFWHSGVIPKGTGVVCTHRERGMKHTFWTVTDPESELIGKVFIVGHTFKDRKEHEFEKFEYSNISPTLKYSILAEKPLTK