Scaffold Ga0213858_10000331

Overview

Basic Information

• Taxon OID: 3300021356
• Scaffold ID: Ga0213858_10000331
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22984
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (75.68%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001582	Metagenome / Metatranscriptome	668	Y
F004956	Metagenome / Metatranscriptome	417	Y
F007417	Metagenome	351	Y
F008281	Metagenome	336	Y
F008595	Metagenome / Metatranscriptome	331	Y
F012117	Metagenome / Metatranscriptome	283	N
F018155	Metagenome / Metatranscriptome	236	Y
F034894	Metagenome	173	N
F067646	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213858_1000033114	F008595	AGGAG	MSKEDNKMENQEPVIITFNGKEYRAADLNEDQMALAAKLNIAGKKLARLQEYYDDYVITDEYKNLCIQSFDRAINATNEEAEVVEEE
Ga0213858_1000033121	F007417	AGAAGG	MSATRYTLQVQLPSIGWVVAIKTSDLFYMASKRARLIAQGHKVKLTKEKK
Ga0213858_1000033123	F008281	GGAG	MNLMCNTKHGVIQWRWKDSGQPSPEYKSLNHQWWIPKKTEFELVTKVDPTIKQEIKDEIWEDMQSDFEYQKGIYKLHKLNKRESK
Ga0213858_1000033126	F034894	AGGA	MNVTFNLMGGGELNIPSRAISGFYKDEFTSEVIVEVNGDEYKVRDSLDEVRYILGLAR
Ga0213858_100003313	F001582	GAG	MPLESALDFNAYVDTTTGHGVTATFFEVQQTLWDDLPLIDTLFDIDSGASKNIDIIIDQEYFNIEGGTVPVAGYQPRAIVKASDVPYISQEDKLRVDAITTDQGNVLKAETTFIIRTVEPDNTGLISLVLEEE
Ga0213858_1000033132	F018155	AGGAG	MGQHKAKVEQRRKELEAEKLDKQIKTYYFQKGAGKHYREVTYMSGKVVRTEFND
Ga0213858_1000033133	F067646	AGGA	MIEWILYFIAGIFGLVFIGIILSVLAFIYVIRELD
Ga0213858_1000033136	F012117	AGGAG	MDILGGMSSSSGESQQVYLAFKTMQQKFFANGETPVEFQYLQLDPATFKSGWGRYTKAEGFEYHWDDKFGVVSSKPADDFKRAFSAWVFPQGAQHAYLWQRFTYAETSAFNSLLATFWNQMDTSSDSLPVVKFEGSKPIQVGMGNSSELTFSFAKFAPRSDGFVIPQWYLDQEAPVEDTFKSPNDGLSDKVAEMVSQNELTDDDIPF
Ga0213858_100003316	F004956	AGGAG	MKMISPDGKVSIEAHPSKVESLLNKGWKEEAVHSQDKIKSSSKKKSKDEVENGNT