Scaffold Ga0213858_10000100

Overview

Basic Information

• Taxon OID: 3300021356
• Scaffold ID: Ga0213858_10000100
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36610
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (92.16%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000200	Metagenome / Metatranscriptome	1633	Y
F001655	Metagenome / Metatranscriptome	656	Y
F002858	Metagenome / Metatranscriptome	525	Y
F023856	Metagenome / Metatranscriptome	208	Y
F042908	Metagenome	157	N
F056585	Metagenome	137	N
F057340	Metagenome / Metatranscriptome	136	Y
F090242	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213858_1000010024	F000200	AGAAGG	MYKIYDFRCTNGHVFEEMVESGVTTSRCGCGANATKLVSAPSFHLDGSTGDFPGQHMKWVREHEKAGRKKSPQ
Ga0213858_1000010032	F042908	N/A	MKFSHGDALTAGSSNTILDVPTGYDAIVTYLFISNTTGSSKSIDARWVHNSVNIDFLSGKNVGSKDFLEFGGQYGEFLVAKEGDTLTLTPEAGSTFVSIISFELVPATPRLNF
Ga0213858_1000010041	F056585	AGGAG	MTRETWEMWADEYQEYYDDETPVYPDDLEEWKKEEQKVIDEVIQALQGVTA
Ga0213858_1000010043	F023856	AGGAG	MRCKACDRILEESELTKKDAHGDFLDLCGICLSATASAGVDTETMQYYQYEIFTEDKDYDTLY
Ga0213858_1000010044	F002858	AGGAG	MLIDEKSIYEVTGGDYSVYCFGYTQARTVTNDIMKRDPWGGIPFVIRKDLEVSFDDKGNVVMSRVVLDKILFLASDELPEGEG
Ga0213858_1000010045	F001655	GGAGG	LNMKQPENDHTKHFGNDGPIGNDAEIIVYYEERGPAEPVLRIPFWYCKDELGMHENFEASVRRTAKALAESYTYWPDGYVHVQTIINEEYVNII
Ga0213858_1000010051	F090242	GGAGG	MSRKSRRSPLGKFRSAFEDDVSKILTGFDYEPFTVPYTIERSYRPDFVHS
Ga0213858_100001006	F057340	AGGAG	VKRLLLLLLLSGCVTEPDTRICAEYGSYTYTKNKCVPFYGALICGDEEVTEVFCKRYFEEEN