Scaffold Ga0194047_10003003

Overview

Basic Information

• Taxon OID: 3300021354
• Scaffold ID: Ga0194047_10003003
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9498
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.701
  • Long. (^o): -93.727

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017287	Metagenome	241	Y
F027399	Metagenome	194	Y
F027764	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194047_1000300315	F027764	N/A	MNIQIEIIKENKDGSADALVHFDAEGLGILVETGIISILRQYIEQEKKTAKKGKK
Ga0194047_1000300318	F017287	N/A	METYARRVFEGEAPCDKCDQADNCRAYEWACRAFSYYVFHGTFEAHTARVPTRELFDRIFQDDDKALKNYLKALKEKQ
Ga0194047_100030038	F027399	AGG	MNFTFTWILDKFGFQAKPAFDFPVKPAVKKVAKKATKVVAKKTKTTKK