Scaffold Ga0213840_1016654

Overview

Basic Information

• Taxon OID: 3300021341
• Scaffold ID: Ga0213840_1016654
• Source Dataset Name: Coastal seawater microbial communities from Marineland, Florida, United States - SWPA TP2 #2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2904
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Marineland, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 29.6703
  • Long. (^o): -81.2145
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F094834	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213840_10166548	F094834	AGG	MAHLNTCRTYKELTGGIWVHHSDPDPNCNDTSHHANYTQENK