Scaffold Ga0210307_1138644

Overview

Basic Information

• Taxon OID: 3300021336
• Scaffold ID: Ga0210307_1138644
• Source Dataset Name: Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1073 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 916
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.233
  • Long. (^o): -123.886
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039672	Metagenome / Metatranscriptome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210307_11386441	F039672	GAG	MSPDLTSIRVGQRLPECSAEIVLSTLLFEEVELLKGLQSVDGKDKSIVGGHTETRHVVLNLDVVEDHGGDVMGVLLGHGLVGVGLNLGGDSVSVSEDGSGDLGAEGSGVVVSLLLGVGDSEREVLGDLVEIALDGGEELSLWVLLNLSGFGSSRLVSSDVLIGNGVSSHIWESSNVLNGVWVVVVSLDSSSSGDKSAISQEFHYFI