Scaffold Ga0213867_1007581

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1007581
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4627
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001855	Metagenome / Metatranscriptome	626	N
F012041	Metagenome	284	Y
F034401	Metagenome / Metatranscriptome	175	N
F099208	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_10075811	F034401	N/A	MSNLTNGGNMALQYDYTALDTEGWTEQQHDTAANFCWTMMAIDMREVTKENQDEIVFRIMFLQMLDLGPWTKPHSLAFVKGQVHGMIGYKCNVGQDPRYKFIRRWIKA
Ga0213867_10075813	F012041	GGA	MTKKYKVTLEVDSEWVKNFDLSFDADSEQEAEAQAMVEVKMNLSDYITAYADEVEDD
Ga0213867_10075816	F001855	GGAGG	MQPLRKDHVDHYKDFVKDEFSLASNKVEREISQQAQDKVEEVGDKFATVINKNLPALIKEMAKKEKALRDFQSKKSSMEHDLRVDAQIVADKITEIFNNTIKRNKWDMNRICIDIHDDKDPVDYITKKIKKACYEEAEIHARAQHKLYHALENKKKKCLNILYTGSHIQPTLVELQKEMATANIQLDLPNSLLALPSK
Ga0213867_10075818	F099208	GAGG	MGVAVDLKKEEFIGQGFSKKEAKIKAHEWCATTNTCRGCSQVVQPSWWSWKQGYCKDCID