Scaffold Ga0213867_1006294

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1006294
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5077
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Kajamvirus → Synechococcus virus SRIP1 → Synechococcus phage S-RIP1 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036186	Metagenome / Metatranscriptome	170	N
F062787	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_100629411	F036186	N/A	MMINQNDMTFRFALAVLEAEYNSIYWGTRTVRDMPSSLIDAIMWETESPDKVYHVFETRIGTVRLVADDQVIPLAKHYHVTPDKVYTTA
Ga0213867_10062943	F062787	AGGA	MRLQKPQLKEWQYTQTDGQVRYLLAPDLEHAAWAAAELSGGTKFVKDVRLCDEW