Scaffold Ga0213867_1006027

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1006027
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5196
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026158	Metagenome	199	Y
F038462	Metagenome	166	N
F047368	Metagenome	150	N
F050008	Metagenome	146	N
F052258	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_100602710	F026158	GGA	MLQFSSTTESKASAVQCMEGFRDKIEMLMKAGDILDHCTRGRSTVEDAQAAREKSLEIWKKGETIVEAARQGGAYAPSFREWLIKEGHHTPRGK
Ga0213867_100602711	F052258	N/A	MKKTKQIETEHKLVNSEREAEAAMVLFACILGGVILILLAIAMG
Ga0213867_100602712	F050008	AGG	MSLVNMNETQRELVLDLAEDFAPFVKKVESGMALTRNHYGAYGSMISKLSKGNRKLALVFSYALMMAGANGQGISDAMGAFFPE
Ga0213867_10060274	F038462	N/A	MNEIKVSTEQIDPYTEVFALDVDDVSLQRLQYGEVGSPHPYVRVADITKALQQRAPRCDSDLLDLIDNQGYTYCFFASEGEVTKNKHRCVAIYSPTGQQLTGVAEGFETVREALGYVMDMEEQS
Ga0213867_10060279	F047368	AGGA	MPNKCGAIKHAHTEDEALKHLAVGNKSKGYKLKRSGVSIIVLNIEEIKDT