Scaffold Ga0213867_1000239

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1000239
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25349
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (80.39%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003834	Metagenome / Metatranscriptome	466	N
F005743	Metagenome / Metatranscriptome	391	Y
F009561	Metagenome / Metatranscriptome	316	N
F018266	Metagenome / Metatranscriptome	236	N
F023860	Metagenome / Metatranscriptome	208	N
F026154	Metagenome / Metatranscriptome	199	Y
F028035	Metagenome / Metatranscriptome	193	N
F046634	Metagenome	151	Y
F050676	Metagenome / Metatranscriptome	145	N
F080522	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_100023921	F080522	N/A	MVKGGDIGFTKTPKKKPSVFKKASKTIIKKGIKFAFSPLSIGLAAGTVAFKGIKKAGNAPGIKFSEYRQFDKRARKII
Ga0213867_100023929	F028035	GAG	MITYEVMQRIEGDTDKHSNYQLIQYEFPFPENSVLIERDKEMNRILNKPIIITTSNNNNCQQ
Ga0213867_100023930	F046634	AGGAG	MTTEQQSFVPYTESKSVEDRIAYVKANPHKYMPKAQYDLVKSLHNKIEALDSKMNEILAK
Ga0213867_100023932	F005743	AGGAGG	MSKNLIVYKVDYVNRHEDYNTQTGRFVRTKRIVMTPDEVNQTDGYWRNHRNVEKKFAMQMMGKEDACWDNKYRVMRVRKAXKKHLNIGQLKHGQNICYG
Ga0213867_100023933	F018266	GAGG	MFRVILENKFRENPINLSRAVKLLYNQDFTGSIRKENILWWKKYFLKVIHLPILYPKTGYIQIVKIYRDKKPSIRVVTIPSGSDKRELLVLNKIYGGNNG
Ga0213867_100023935	F026154	AGGAG	MNGIISVVRFVTYTVGGLAIRKAWNWLIEDVDPIPGSQEFDNEYYQTKSKYIRLTKLKEKHEAYRKNRXSNSKINNIPIKNGDRNM
Ga0213867_100023936	F050676	AGGAGG	MQTKLPVKSRVADKYQPMLTYYAELIGLCHETVTKTESLKMLDPMGKKTTATSLFIRVCQRMDKSIDAKEIADKLETVSKSTEQRSAVNE
Ga0213867_100023937	F003834	AGGAG	MSSSKTPIRQDEKDYLDHFIETKYDDRKNVLKTEMQDTIDKEAEDNFEAFKNKLKINKLHEDIRALYNDHKKFANEMDSILLEKKGKLDNAINVLEDKLDQWKKVRKWKNDIERSLIKEPDELDRLLKKLCHEETERDYYSGPRGKAIQMLDMSKEYCKNLLNAGQSLSTVWGVLDQEMGKEKINTNTIPKPEFLSITK
Ga0213867_100023941	F023860	GAG	MDKMKEMFELRNAIKNFLENTLEADIQGAGMSVTEPSSADISFKIDNINYTLTIDEE
Ga0213867_100023944	F009561	AGGAG	MTELKDEHLEVISKNKSKKYEIDKMVEQLSDAKESVAVLSNAIECGFLHDKHSLILQEWIVEYEELSQQLDTHLTEVRDHGXKST