NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1000032

Scaffold Ga0213867_1000032


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1000032 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)62384
Total Scaffold Genes126 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (23.81%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006200Metagenome / Metatranscriptome379Y
F007723Metagenome / Metatranscriptome346Y
F013232Metagenome / Metatranscriptome273Y
F016004Metagenome / Metatranscriptome250Y
F023218Metagenome / Metatranscriptome211Y
F024651Metagenome / Metatranscriptome205Y
F070147Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0213867_1000032106F023218AGGMIFPSYKRPIEYINHRPYLIHAIISVERCKNVNMIKEWLGVDTAFKVKGRDYWFCEEIQEANWEQL
Ga0213867_1000032120F007723N/AMIKTIKSKLLTYLFKDWVMNETDLETLQVSKQFIKKREIEITGHVPVLGFRSHLSQEQRDNPTTT
Ga0213867_100003234F013232N/AMSDREIMNAKSGIPMWWKPGIAFLREDWINHRDLKHFSNKECTDRKCTCENPKLVNLWEHDSCVRGRIDTDVCVKCNEVQSFSIIR
Ga0213867_100003235F070147N/AMKDVLLLILEAVSVDMKRRCEQNSDEQSRDTYGKWHGQIVTMINTIKNGGVK
Ga0213867_100003236F016004GGTGGMNEELLKILETLKEDFEMLQDGSWDLNYSDGSEIQASLDNVEKAISIIKNE
Ga0213867_100003237F006200N/AMSKTKQDWLETLVKKYSLPKEEQKEKRGILSETQLKNLKNGKS
Ga0213867_100003260F024651GAGMYNNATFVDKEQLKNLKKMDNFVKDNMARFTEEVGMQVREVIAEVIKKGHYYEGQAEVLNMIANEYNNWKRENR
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