NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210339_1214832

Scaffold Ga0210339_1214832


Overview

Basic Information
Taxon OID3300021332 Open in IMG/M
Scaffold IDGa0210339_1214832 Open in IMG/M
Source Dataset NameMetatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.384 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1034
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.178Long. (o)-123.853Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018096Metagenome / Metatranscriptome237Y
F046265Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0210339_12148322F046265AGGAGMVFPVIPWKVFLDALQHQQPSTLELWLRRWLFTNEGVIMADSTLANNS
Ga0210339_12148324F018096AGGAMEALKIVLPSAERKPCVCGATLYRTNVTRPRHEPIWLCSRHCGAYGLTYESALRRKVRLDLLSWGNLRRHAQRLIAADEESDDEFLLRQR

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