Scaffold Ga0214544_1005134

Overview

Basic Information

• Taxon OID: 3300021320
• Scaffold ID: Ga0214544_1005134
• Source Dataset Name: Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25724
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (68.57%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.06
  • Long. (^o): -118.44

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019604	Metagenome	228	Y
F044323	Metagenome	154	Y
F046863	Metagenome	150	Y
F055472	Metagenome	138	Y
F089948	Metagenome	108	Y
F104569	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214544_100513414	F104569	N/A	MDDVSLSVIIYSYLIYLSIYLYQINFMFRYLFDVIETIRLNDLYGFVDPQLTHEGNNFDDTQAYVTKCFQREKEIYFVPYVVG
Ga0214544_100513417	F019604	GGA	VVKEEGKPYFLNADGSTRFPFSWTGTPYRYKDMGTDELSTGDKEVVKTLMKFVDKLPTKGLVRVYNSVHPIIDIEGICLLLKLC
Ga0214544_100513427	F044323	N/A	VKVDVAAGGNFFAREAIYWFVIWDHGRVRELEFLIGSPVKNVNKVALVDEDFLDGVVFDFNSDDHGVVLLVVEAVKFIVCEDDGRHAAFVMGMGNMVDGLNIAEVFLSGRRGGSFTSEATRDVVDSAT
Ga0214544_100513428	F055472	GGAGG	MVGSRGVAGSRGMIISTDEAAKVTSTDQFFYFILECFAVFCSMAMIAVVAAILGHISIRRSGCLAWWRNEVSL
Ga0214544_100513429	F089948	GGTGG	MRSACRASSRMQDRATIRRAYLVKRGWRGSRGRVSGRGGCGVGLAVVAA
Ga0214544_100513430	F046863	AGG	MGDVDFEVFIRVDFTGIMVQCEGFPLGRKGGFGDKVGEGVTTSRLVGWERMVDHSGEGGGQVMRGDVGCREVLWVVRWNMCSV