Scaffold Ga0214544_1000444

Overview

Basic Information

• Taxon OID: 3300021320
• Scaffold ID: Ga0214544_1000444
• Source Dataset Name: Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 74919
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.06
  • Long. (^o): -118.44

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044323	Metagenome	154	Y
F046864	Metagenome	150	Y
F089948	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214544_100044451	F046864	N/A	VGLYSLSSSVGWKAGDLAALEASLAFPFRVGSTSIFRLRREFSCRSASISSALRFFRSVSSCCIFAWPSRMAARLGVMPAGPEEPACACLFTPALLRVETIFGEKWVLKVFVLCPVGANCSAENKQDKLGISVTLPM
Ga0214544_100044456	F089948	AGGA	VVVLRGGGIRSACKASSRMRERDTVRGAYLVKRDWRGSCGRVSGRGGGGVGLAVVAA
Ga0214544_100044458	F044323	AGGA	LQLFGLGSLTKHGVEVDVAAGGYLLARKAIDWFVIRDHSSVRELEFLVGGPVEDVDGAALVDKDFLNGVVFDFNIDDYGVILLMVEAMKVVICKDDGRHTASVVGIGDMIDGLDMAEVFLSGRRGGSSASETARDGVDGAT