Scaffold Ga0214544_1000172

Overview

Basic Information

• Taxon OID: 3300021320
• Scaffold ID: Ga0214544_1000172
• Source Dataset Name: Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 100458
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (54.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.06
  • Long. (^o): -118.44

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022598	Metagenome	213	Y
F042760	Metagenome	157	Y
F064435	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214544_100017249	F064435	N/A	MVPHRRTSQSSQGDAPDIARAIEAMVTAITQQSTAMMQQHEASMQRQAVSLEQE
Ga0214544_100017263	F042760	GGAG	MQDDLLEKVVIPKDSFDITNDSVPEEPQVPEIIENDEISINYVLNHIIRNQNEVNIDETLTYNIVMNAMNDNEDQ
Ga0214544_100017283	F022598	N/A	MKLYTMLQDVDIDEVSNFFNISFKNKLQYKLLMIFYLSVFQESIGESGLVDPNTNYG