Scaffold Ga0213903_100792

Overview

Basic Information

• Taxon OID: 3300021289
• Scaffold ID: Ga0213903_100792
• Source Dataset Name: Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States ? Hobet_Cave_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1849
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Switchgrass-Associated Microbial Communities From Reclaimed Mine Lands Soil In West Virginia, United States

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 38.083
  • Long. (^o): -81.98
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043603	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213903_1007923	F043603	AGGGGG	MNNIAQTRTTRIESALSTAYVLPAMLAVNTVALLALDQIGGIPQWVKAAAALFLAF