Scaffold Ga0223826_10000018

Overview

Basic Information

• Taxon OID: 3300021256
• Scaffold ID: Ga0223826_10000018
• Source Dataset Name: Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 295155
• Total Scaffold Genes: 455
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 91 (20.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location

• Location Name: New Zealand
• Coordinates
  • Lat. (^o): -42.26
  • Long. (^o): 171.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027710	Metagenome / Metatranscriptome	193	Y
F028722	Metagenome / Metatranscriptome	190	Y
F042680	Metagenome / Metatranscriptome	157	Y
F048027	Metagenome / Metatranscriptome	148	Y
F063246	Metagenome / Metatranscriptome	129	Y
F066344	Metagenome / Metatranscriptome	126	Y
F072887	Metagenome / Metatranscriptome	121	Y
F082004	Metagenome / Metatranscriptome	113	Y
F082826	Metagenome / Metatranscriptome	113	Y
F089629	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0223826_10000018140	F089629	N/A	MKKSNFSVSELLTAVVNVFDTIAACKDFASCKFGYGFIARSTPKFRAPKATAAEWAADFGNEMPNIVKVTKVTNARAYDYAKAINRQLAKQGDATDFKSSSMNGYEWVVPNIIKRAEKDGSLQMCVTFKENDRTKFETFYIVADHFATADELNFITEHLYKAPNKSVKQTESGIADEDILMVRNYKFSNIIAVGQTPQIEEIWGSIE
Ga0223826_1000001816	F028722	N/A	MATTVQNGRTCLETRGYEERHNEITRSDYNITNQYGATHKDALSDGDAQGKGTGHGGHTHFLPNCQLPTTQINYSNFDTENGGGCYDIKGRNGISGRERAMAISMYNKEVPYGAKLVDTTANINDGQYFVGQQIGSPVSNCG
Ga0223826_10000018188	F048027	AGGA	MAKTETKKEKFSLDTRVRLVAENNGGKGVKMPVWFNLPQHKALRQQHIDICKKLVELSVANGNYPITYLVYFAVGKNAHRKEVFEDGYTKIDEKKAEKIFSWLKIAAKYHKNDKLFRNPNAAHALCRFYDKFSTKTKDFKAALERMESNPKIDLKNAKALVEGMGIGKQSKDAELEAAEMAIEPAVANA
Ga0223826_10000018191	F082826	N/A	MQKYVIELNYNASIVIEVEANDEGEALDKARDQAEDADIRQFTLGKENESKILRRD
Ga0223826_10000018331	F066344	N/A	MGKFLQMMSQNDSKALVARASQINTQAKIAQEEIIHKLKIEKTNVEMQIQGLTDFAPDTTDSLRPGVKGWNPNKWAADLQDAKTRLYELGVELKIAQATYDEFFGGDDEDAADAQ
Ga0223826_10000018348	F027710	AGGAG	LHPQKTMIKKKLYILVDRALKPVYGCVQGGHAVAQWMIEHPNSLEWSNDYLIYLYADVDKWKRRLEGYGIDYTEFKEPDLNYKTTALAVFGHEELFKNLKTVTED
Ga0223826_10000018372	F042680	N/A	MILDDIKPLIKGIAQLQYIMAGGIAVYHIIDVDGNKYQLEIDLSDKKDVGETAAFKPTEKGLLLMRWIRRANENGTLIKIK
Ga0223826_10000018398	F072887	N/A	MKLKTDNMEKCMRCKHEIILEGNFMLSEINGEELNEDDDTMVTYAHCPYCGARYELTGTPESEKRNYPYWNSFK
Ga0223826_10000018438	F082004	N/A	MILHLNLTEDHLKLVRFLNVEDKDDDFLKINKKVMLTMQTHILDDIAMILGLRDKAIKGTEEDADGAAYPDDVEKYMLDTYHYVSDNLYLIETLLHQHVFDGVKPTHYRAKDSDLVWEEVKDE
Ga0223826_1000001860	F063246	N/A	MGKLKIELNDTQNIRDLLQNAYNLADEQIVQAQNEINKLSVATQLQDEPMEARSKYAKAINDYLGLKDKAISKKIEIAKILTDIYHHNGDVKGALEGNETALNEMAFNFDDIKKIVDDSLQEKTKKIELNKK