Scaffold Ga0223825_12683325

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0223825_12683325

Scaffold Ga0223825_12683325

Overview

Basic Information
Taxon OID	3300021255 Open in IMG/M
Scaffold ID	Ga0223825_12683325 Open in IMG/M
Source Dataset Name	Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	136489
Total Scaffold Genes	188 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	136 (72.34%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location
Location Name	New Zealand
Coordinates	Lat. (^o)	-42.26	Long. (^o)	171.6	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036964	Metagenome / Metatranscriptome	169	Y
F072949	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0223825_1268332530	F036964	AGGAG	MINFLKIFFPALMVTGALGSLILNIITNKTEXPVSLQWFGAALLYTALLFRNK
Ga0223825_1268332599	F072949	AGG	MAKRKSVVNKIVVDKNAAQFMRTAENLARKGKTNKKLHGRNANLKATKYAK

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