Scaffold Ga0223825_11323260

Overview

Basic Information

• Taxon OID: 3300021255
• Scaffold ID: Ga0223825_11323260
• Source Dataset Name: Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 189572
• Total Scaffold Genes: 389
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 234 (60.15%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location

• Location Name: New Zealand
• Coordinates
  • Lat. (^o): -42.26
  • Long. (^o): 171.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017772	Metagenome / Metatranscriptome	238	Y
F065312	Metagenome / Metatranscriptome	127	Y
F072829	Metagenome / Metatranscriptome	121	Y
F087968	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0223825_11323260209	F087968	AGGA	MLKVTKTYARTLYDMGKPVMIIPNKMRTDSFMACWQIKPFNDPNASFDKLVNAISYYNCSPETGLGLAYYTQE
Ga0223825_11323260214	F065312	N/A	MQGGDKMSKKQKPTPKTWVEVFQGERKEFPQGYCVTRIIPDKRKKAPKHKEREFDD
Ga0223825_11323260381	F017772	GGAGG	MNEPRLKILPPWTIAIRKFEALFDGDPQIACNCNFGGDAPSIVLACNNGDKVAALQKILPEEISFGGVKLKVAVDGTPSNRAFTSKVDLFNAAFEKNPAYAYSVCPAEEGYQWISMTYVVFNNCVVQFAADNLNDCHGVISTLYETIANELLTGPVCDNVCFNTNVERAGLGKPLGEWP
Ga0223825_1132326065	F072829	GGAGG	MENFYDKLIDEYFNRHPDAGLAWWMLPLEQQPEGFKQEMYDIMWNLTHKEQNTDVQ