Scaffold Ga0206682_10080263

Overview

Basic Information

• Taxon OID: 3300021185
• Scaffold ID: Ga0206682_10080263
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1670
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051139	Metagenome / Metatranscriptome	144	Y
F056896	Metagenome / Metatranscriptome	137	N
F072257	Metagenome / Metatranscriptome	121	Y
F092077	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206682_100802632	F092077	N/A	MNKDLSPLQRSFERINELLPDNNDVMLRCSLYEMCAKLTNESFAEGINTKY
Ga0206682_100802633	F072257	N/A	MQELDRVVHQWCDDNDRWMYIEYDRDGKVMGLNFMQGDEYECFKKDWCVSDSGLTEFYKQMLYTFPIECNKTSTLTFINKCMWAYHGAISSRDEYAEPKPTCRRHCTIYKTNTTVDR
Ga0206682_100802634	F051139	N/A	MQKATLELPVKQFHQIYDLLGDILDHESETNDFNMENSDIELIEDTRNELFNQIPDEEPSEITYAFTTNITAHQITPLKLYKIKRCSDHGSGFLITNDRRSEVYCIENGCSHLSSDQSENWNLITVTNK
Ga0206682_100802637	F056896	N/A	CCGAEASYLSDELCGDCLEHAVFDDEDEDMGDTCRNGKEWNKCNCC