Basic Information | |
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Taxon OID | 3300021185 Open in IMG/M |
Scaffold ID | Ga0206682_10043539 Open in IMG/M |
Source Dataset Name | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2516 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 36.6907 | Long. (o) | -122.3448 | Alt. (m) | Depth (m) | 40 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009491 | Metagenome / Metatranscriptome | 317 | Y |
F070651 | Metagenome / Metatranscriptome | 123 | N |
F087771 | Metagenome | 110 | N |
F099111 | Metagenome | 103 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0206682_100435393 | F070651 | N/A | MKITIVQTGKTYIDQGDDVKVIHNHDSIIKIAGEYYKNVKTNEWISEDEYYESLCLKFEEDQSNKYY |
Ga0206682_100435394 | F087771 | GGA | MKNENIKLLVQLEELLKHHDWFYNMSDDHRYYTAGREQSQKIQQTIEKLNNNNCSVMAQELYNKYSKTL |
Ga0206682_100435397 | F099111 | N/A | MTQETVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDDQFVEDLIVFKQQVIEELYNRMKK |
Ga0206682_100435398 | F009491 | N/A | MNSIKNSQIKILKINNKTYLPYQLHQLPKFFDKYTTDFFNLKGYCYINLEDHSDSFNLTNFKNRLTFHKNLSGSLSR |
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