NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210396_10000143

Scaffold Ga0210396_10000143


Overview

Basic Information
Taxon OID3300021180 Open in IMG/M
Scaffold IDGa0210396_10000143 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)124967
Total Scaffold Genes120 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)84 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002153Metagenome / Metatranscriptome589Y
F004588Metagenome / Metatranscriptome432Y
F033528Metagenome / Metatranscriptome177Y
F101553Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0210396_1000014323F033528GGCGGMYVLTLNPGESAFVRCTLCENLNLMVTNEKESDVKLQFNTKDDQLDAECAQCKGHYFWTPGSVAIVKPTEHSN
Ga0210396_1000014356F101553GGAGMKTDKGEFDEVLRPMLQKPPQKTAKIHAKKKPKAAGPP
Ga0210396_1000014365F004588AGGAGMKLQSISKSLLVGLALLLATSVFAAAANKGSMQLLDPVTVSGKQLPAGEYSVQWDGSGPNVEVNIMKGKKVVATTPARLIDLSQKPVRDAAVVKNNDDGSRSLAEIHFGGKAFGLAIGTESASMDGSGSSK
Ga0210396_1000014383F002153AGGAGGVKKMLRNCLFGLGLALLVVSVAAAQDNFVKGGVAGVSGLHGQPVLPPAALFTNCGTGCTSYNTGSGYYISGSAAADGPGQTIAMGFSAKANTKFVKALSPNTNYTAVKGGKMSAYLLHGNATVGPTTELAKLVQHGAIPDYPSIKTISYTLAKGAKPVTFAKGKTYFLCETEPAPTVVLLWMVSNSDLTSPLWFQVSDTCTKKGTVWSNATGAVNGAAFEIN
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