Scaffold Ga0210408_10000011

Overview

Basic Information

• Taxon OID: 3300021178
• Scaffold ID: Ga0210408_10000011
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 296970
• Total Scaffold Genes: 295
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 231 (78.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019189	Metagenome / Metatranscriptome	231	Y
F027575	Metagenome / Metatranscriptome	194	Y
F038796	Metagenome / Metatranscriptome	165	Y
F040778	Metagenome / Metatranscriptome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210408_10000011108	F040778	GGAG	MSETVDIQVKPKPARDSSKDKRTLDQVEKWMETIREIGREPVKS
Ga0210408_10000011201	F019189	AGAAGG	MKSLSTKLILSALGVALLATPAFAAKRHPASYQDLQNSAITAPSDVGTYPNGATKSGSAYSRESGAQDNLIR
Ga0210408_1000001146	F038796	GGAG	MVDKITAQRDVEYITELLAKETDENRRVILQRLLADAEKLRQTTEDEDQEEISNKKTNADRVNSNDD
Ga0210408_1000001194	F027575	GAG	MAALIAWMLVVRVDDLVKDGAKRRRLRRSSILDKIINANRVPSKRSRPLSKASHVL