Scaffold Ga0210408

Basic Information
Taxon OID	3300021178 Open in IMG/M
Scaffold ID	Ga0210408_10000006 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	359301
Total Scaffold Genes	369 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	290 (78.59%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

359301

Total Scaffold Genes

369 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

290 (78.59%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015497	Metagenome / Metatranscriptome	254	Y
F022483	Metagenome / Metatranscriptome	214	Y
F026988	Metagenome / Metatranscriptome	196	N
F044086	Metagenome / Metatranscriptome	155	Y
F044088	Metagenome / Metatranscriptome	155	Y
F092494	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210408_10000006187	F092494	GAGG	MPTRRRKKSPDRPHTPKRLTPEQEDAEREAAFAAIRALFCQVAQPWCSCPRAYCRRHHCCIAEAGPGPCLKRRWPLLTPAEQKQAHSAVIDGGAQRVRPRTHTEWSLRRFPPSNFVH
Ga0210408_10000006225	F015497	GGAG	MGWRACLVAALAMATVEAARAQSVANTITEFGLIGTWATDCTQPAAAGNYLTVYAIKPSGEVSRTYYDEPGHVYNNYKITDAKRQAPDMLWYEQVWDFEGSPANIAGNRVQVLLNMVDDKFQIVSSQGSDGSFFVKDRKFPGSGDESPWQSRCQGR
Ga0210408_10000006249	F044086	GAGG	MSDPMDHFAHPDEDIFVPKYSDENLEAAVGTSPQCFPTFTCSQPMCATGGGCGTWPG
Ga0210408_10000006284	F022483	AGGAGG	MDQPMKKRDFDFHYDGYGVERSLESEQAPDTAGYWFLAAVLFAFIAAGIIVYRAGNAEIQTAANYPNNPAAQSDPVTSPPIVPR
Ga0210408_10000006334	F026988	N/A	MYRRALRKKNRSESIRQSFVVVAVGALLGTGLFAIADYFTAQHWVRPAPAARNGGEIYTGSVLYMPQEGRNCHQMLFDNQTGRFTDNGSVDCENAAYRGVDGNLPKQWSSARARVIADGFRH
Ga0210408_1000000673	F044088	GGA	MTPGEAAAGYRLYAAYCAEIAQTVTDSARKVALLDMAQAWARLAEIADKDSPAEDAPAAM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210408_10000006

Overview

Ecosystem & Geography

Associated Families

Sequences