NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10029647

Scaffold Ga0210405_10029647


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10029647 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4388
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F004291Metagenome / Metatranscriptome445Y
F040290Metagenome / Metatranscriptome162Y
F046497Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_100296472F000092GAGVKQHLGRQSGVQTVEVSLIDGKVEVTPKEDGQIDPVQLLKATYDSGVTAAEMDMTARGKIVKDSSGSLALQAAPNRSFALTPNELSKGLEALADTQTMVTVRGQLYKKPAGKKKVDPSASLKLLILEVQKKE
Ga0210405_100296473F004291AGGAGGMNTKKLALLALLVSIVSPAAQAQIKHIEMRVEGMT
Ga0210405_100296474F046497GGAGGVRIRNSYYLNGRFARVAPSFFLLLCVSTVKAQGPAPETAPPLFPGGGLISYNSIFTTRGLIPGASGGVPATAFPTFSHEADFNFTWGFYRNFDLAVLVPVVTNHFGSGNAPAVGGTGLGDAMLLVKYRFYRRDSERGTTQASVTFGPKIPTGRTDLTDINGKRLPASLQPGSGSTDLFLAANWTYTGLFHLRRLVADEDFHSLIRSQGTQATRLGSDNESRFWLSYRPYESKNVAREWFIGPVLTWLHSQDERIGGVNQSGSGGDVLLAGITTYAGVRPGMHVWLGMDWDVVHSAGATFMPVRRHISFGITQQFRMHR
Ga0210405_100296475F040290AGGMRSVRPIFQAMLVVALAAYALDCGAVTTPEQAIHCCNSMPCSSDGHHGQDCCKTMPTVRAPFVEPSNVHGVSYSPAVLAVLPAAGESHGVVSSSRVIAALCHAPPIRHAPTPLPLRI

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