Scaffold Ga0210405_10002571

Overview

Basic Information

• Taxon OID: 3300021171
• Scaffold ID: Ga0210405_10002571
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18706
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000552	Metagenome / Metatranscriptome	1033	Y
F005013	Metagenome / Metatranscriptome	415	Y
F013693	Metagenome / Metatranscriptome	269	Y
F070951	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210405_1000257110	F000552	GAGG	MEAMRRKLVWVERQNFQGWACAQCAWVFNPFGPLVGESIEEMKMQYEKQRDNEFASHVCAAHPRPKA
Ga0210405_100025712	F070951	AGGA	MSSEYPFRAKTIVCAAPSTRRSVQFLVAAYIHALMLVILVIFSRNVFSTAIRTALSPLLR
Ga0210405_1000257123	F013693	GGAG	MKDAGSGLSEAIKNKSLRAITAVSYQDIAGGLAHEMMGLIRPSELRKCSPPFKMLIIDSSGTVVFECRVSKDGKVRPVGLVPMVQDSHFPATALLTDSSFVTRTFRIEHPATSCPYN
Ga0210405_100025714	F005013	AGG	MTTKGARSAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKARRRWSSDAVDRCGGTHKVATEAWKYRRAISLPSGSVA