Metagenome / Metatranscriptome Family F070951

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070951
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	59 residues
Representative Sequence	MSSEHISKTKRTSCAAPSTRRSVQFLAALYIHALALVILVVFSRNVFSTAIRTTLLPLLR
Number of Associated Samples	76
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	88.52 %
% of genes near scaffold ends (potentially truncated)	27.05 %
% of genes from short scaffolds (< 2000 bps)	43.44 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.885 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (38.525 % of family members)
Environment Ontology (ENVO)	Unclassified (33.607 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.098 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.86% β-sheet: 0.00% Coil/Unstructured: 51.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF08281	Sigma70_r4_2	42.62
PF14417	MEDS	6.56
PF16694	Cytochrome_P460	4.10
PF08447	PAS_3	4.10
PF00210	Ferritin	3.28
PF13191	AAA_16	2.46
PF13426	PAS_9	2.46
PF02954	HTH_8	2.46
PF07494	Reg_prop	1.64
PF00069	Pkinase	1.64
PF13620	CarboxypepD_reg	1.64
PF00072	Response_reg	1.64
PF13495	Phage_int_SAM_4	0.82
PF13188	PAS_8	0.82
PF07730	HisKA_3	0.82
PF07638	Sigma70_ECF	0.82
PF00547	Urease_gamma	0.82
PF08448	PAS_4	0.82
PF00005	ABC_tran	0.82
PF13581	HATPase_c_2	0.82
PF00230	MIP	0.82
PF03544	TonB_C	0.82
PF13565	HTH_32	0.82
PF02492	cobW	0.82
PF05015	HigB-like_toxin	0.82
PF03824	NicO	0.82
PF00440	TetR_N	0.82
PF13493	DUF4118	0.82
PF00196	GerE	0.82
PF13561	adh_short_C2	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	6.56
COG3292	Periplasmic ligand-binding sensor domain	Signal transduction mechanisms [T]	1.64
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	0.82
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.82
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.82
COG3549	Plasmid maintenance system killer protein	Defense mechanisms [V]	0.82
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.82
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.82
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.82
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.89 %
Unclassified	root	N/A	13.11 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.89 %
Unclassified	root	N/A	13.11 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.89 %
Unclassified	root	N/A	13.11 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	48.36 %
Unclassified	root	N/A	13.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	18.03 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	18.03 %
Unclassified	root	N/A	13.11 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.82 %
Holophagae	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.03 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	16.39 %
Unclassified	root	N/A	13.11 %
Holophagales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales	0.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.03 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	16.39 %
Unclassified	root	N/A	13.11 %
unclassified Holophagales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → unclassified Holophagales	0.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.03 %
Unclassified	root	N/A	13.11 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2.46 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	1.64 %
Holophagales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → unclassified Holophagales → Holophagales bacterium	0.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.03 %
Unclassified	root	N/A	13.11 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2.46 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	1.64 %
Holophagales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → unclassified Holophagales → Holophagales bacterium	0.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.03 %
Unclassified	root	N/A	13.11 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2.46 %
Granulicella sp. S190	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. S190	1.64 %
Holophagales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → unclassified Holophagales → Holophagales bacterium	0.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002914\|JGI25617J43924_10005906	All Organisms → cellular organisms → Bacteria	3757	Open in IMG/M
3300002914\|JGI25617J43924_10072999	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1253	Open in IMG/M
3300002914\|JGI25617J43924_10089411	All Organisms → cellular organisms → Bacteria	1110	Open in IMG/M
3300005445\|Ga0070708_100081362	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2932	Open in IMG/M
3300005557\|Ga0066704_10566754	Not Available	737	Open in IMG/M
3300005559\|Ga0066700_10430314	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300006871\|Ga0075434_100145303	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2392	Open in IMG/M
3300006903\|Ga0075426_10146461	All Organisms → cellular organisms → Bacteria → Acidobacteria	1703	Open in IMG/M
3300007258\|Ga0099793_10004474	All Organisms → cellular organisms → Bacteria	4979	Open in IMG/M
3300007265\|Ga0099794_10358514	Not Available	759	Open in IMG/M
3300009038\|Ga0099829_10316763	All Organisms → cellular organisms → Bacteria	1281	Open in IMG/M
3300009143\|Ga0099792_10424306	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	818	Open in IMG/M
3300011269\|Ga0137392_10049591	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3153	Open in IMG/M
3300011269\|Ga0137392_10789570	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	784	Open in IMG/M
3300012096\|Ga0137389_10906996	Not Available	756	Open in IMG/M
3300012189\|Ga0137388_10664157	Not Available	968	Open in IMG/M
3300012200\|Ga0137382_10008929	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5232	Open in IMG/M
3300012202\|Ga0137363_10025521	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4021	Open in IMG/M
3300012202\|Ga0137363_10033839	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3554	Open in IMG/M
3300012202\|Ga0137363_11282828	Not Available	620	Open in IMG/M
3300012203\|Ga0137399_10099372	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2248	Open in IMG/M
3300012203\|Ga0137399_10273860	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → unclassified Holophagales → Holophagales bacterium	1389	Open in IMG/M
3300012203\|Ga0137399_10294039	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1341	Open in IMG/M
3300012207\|Ga0137381_10068048	All Organisms → cellular organisms → Bacteria	2973	Open in IMG/M
3300012211\|Ga0137377_10932511	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	799	Open in IMG/M
3300012351\|Ga0137386_10216315	All Organisms → cellular organisms → Bacteria	1377	Open in IMG/M
3300012361\|Ga0137360_10169045	All Organisms → cellular organisms → Bacteria	1749	Open in IMG/M
3300012362\|Ga0137361_10665977	Not Available	952	Open in IMG/M
3300012363\|Ga0137390_10158339	All Organisms → cellular organisms → Bacteria → Acidobacteria	2251	Open in IMG/M
3300012685\|Ga0137397_10007670	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7508	Open in IMG/M
3300012918\|Ga0137396_10014897	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4867	Open in IMG/M
3300012922\|Ga0137394_10917288	Not Available	731	Open in IMG/M
3300012923\|Ga0137359_10039843	All Organisms → cellular organisms → Bacteria	4064	Open in IMG/M
3300012923\|Ga0137359_10455168	All Organisms → cellular organisms → Bacteria	1132	Open in IMG/M
3300012925\|Ga0137419_10524337	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300012925\|Ga0137419_10895353	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	730	Open in IMG/M
3300012927\|Ga0137416_10654961	Not Available	919	Open in IMG/M
3300015241\|Ga0137418_10019272	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6304	Open in IMG/M
3300015245\|Ga0137409_10022367	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6203	Open in IMG/M
3300020199\|Ga0179592_10034092	All Organisms → cellular organisms → Bacteria	2299	Open in IMG/M
3300020579\|Ga0210407_10009665	All Organisms → cellular organisms → Bacteria → Acidobacteria	7207	Open in IMG/M
3300020579\|Ga0210407_10016119	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5547	Open in IMG/M
3300020579\|Ga0210407_10051629	All Organisms → cellular organisms → Bacteria → Acidobacteria	3071	Open in IMG/M
3300020579\|Ga0210407_10683519	Not Available	796	Open in IMG/M
3300020580\|Ga0210403_10036435	All Organisms → cellular organisms → Bacteria → Acidobacteria	3932	Open in IMG/M
3300020580\|Ga0210403_10042923	All Organisms → cellular organisms → Bacteria → Acidobacteria	3614	Open in IMG/M
3300020580\|Ga0210403_10056940	All Organisms → cellular organisms → Bacteria	3130	Open in IMG/M
3300020580\|Ga0210403_10070514	All Organisms → cellular organisms → Bacteria → Acidobacteria	2806	Open in IMG/M
3300020581\|Ga0210399_10013098	All Organisms → cellular organisms → Bacteria → Acidobacteria	6515	Open in IMG/M
3300020581\|Ga0210399_10013246	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6480	Open in IMG/M
3300020581\|Ga0210399_10054797	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. S190	3207	Open in IMG/M
3300020581\|Ga0210399_10210408	All Organisms → cellular organisms → Bacteria	1618	Open in IMG/M
3300020581\|Ga0210399_10247599	Not Available	1485	Open in IMG/M
3300020581\|Ga0210399_10333502	All Organisms → cellular organisms → Bacteria → Acidobacteria	1266	Open in IMG/M
3300020581\|Ga0210399_11259693	Not Available	584	Open in IMG/M
3300020583\|Ga0210401_10001723	All Organisms → cellular organisms → Bacteria → Acidobacteria	24977	Open in IMG/M
3300020583\|Ga0210401_10080435	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. S190	3067	Open in IMG/M
3300020583\|Ga0210401_10104203	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2665	Open in IMG/M
3300021046\|Ga0215015_10968026	All Organisms → cellular organisms → Bacteria	1332	Open in IMG/M
3300021168\|Ga0210406_10034893	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4512	Open in IMG/M
3300021168\|Ga0210406_10057578	All Organisms → cellular organisms → Bacteria	3380	Open in IMG/M
3300021168\|Ga0210406_10400646	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300021168\|Ga0210406_11266501	Not Available	533	Open in IMG/M
3300021170\|Ga0210400_10019694	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5280	Open in IMG/M
3300021171\|Ga0210405_10002571	All Organisms → cellular organisms → Bacteria	18706	Open in IMG/M
3300021171\|Ga0210405_10014059	Not Available	6645	Open in IMG/M
3300021171\|Ga0210405_10028738	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4464	Open in IMG/M
3300021171\|Ga0210405_10214957	All Organisms → cellular organisms → Bacteria	1523	Open in IMG/M
3300021178\|Ga0210408_10281962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1325	Open in IMG/M
3300021178\|Ga0210408_10498540	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300021180\|Ga0210396_10009406	All Organisms → cellular organisms → Bacteria	9245	Open in IMG/M
3300021180\|Ga0210396_10103546	All Organisms → cellular organisms → Bacteria	2574	Open in IMG/M
3300021181\|Ga0210388_10143963	All Organisms → cellular organisms → Bacteria	2068	Open in IMG/M
3300021403\|Ga0210397_10201254	All Organisms → cellular organisms → Bacteria	1423	Open in IMG/M
3300021404\|Ga0210389_10056775	All Organisms → cellular organisms → Bacteria	3001	Open in IMG/M
3300021404\|Ga0210389_10100670	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2225	Open in IMG/M
3300021406\|Ga0210386_10141536	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2006	Open in IMG/M
3300021406\|Ga0210386_10152473	All Organisms → cellular organisms → Bacteria	1933	Open in IMG/M
3300021432\|Ga0210384_10001327	All Organisms → cellular organisms → Bacteria	34099	Open in IMG/M
3300021432\|Ga0210384_10019053	All Organisms → cellular organisms → Bacteria	6658	Open in IMG/M
3300021478\|Ga0210402_10010895	All Organisms → cellular organisms → Bacteria → Acidobacteria	7848	Open in IMG/M
3300021478\|Ga0210402_10143151	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2174	Open in IMG/M
3300021479\|Ga0210410_10076973	All Organisms → cellular organisms → Bacteria → Acidobacteria	2927	Open in IMG/M
3300021559\|Ga0210409_10324597	All Organisms → cellular organisms → Bacteria	1385	Open in IMG/M
3300024331\|Ga0247668_1054997	Not Available	807	Open in IMG/M
3300025910\|Ga0207684_10001285	All Organisms → cellular organisms → Bacteria	27685	Open in IMG/M
3300025915\|Ga0207693_10101898	All Organisms → cellular organisms → Bacteria	2251	Open in IMG/M
3300025929\|Ga0207664_11660522	Not Available	561	Open in IMG/M
3300025939\|Ga0207665_10289618	All Organisms → cellular organisms → Bacteria	1221	Open in IMG/M
3300025939\|Ga0207665_10452681	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300026304\|Ga0209240_1004974	All Organisms → cellular organisms → Bacteria	5019	Open in IMG/M
3300026341\|Ga0257151_1018154	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	736	Open in IMG/M
3300026551\|Ga0209648_10001386	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	19520	Open in IMG/M
3300026551\|Ga0209648_10025671	All Organisms → cellular organisms → Bacteria	5151	Open in IMG/M
3300026551\|Ga0209648_10039990	All Organisms → cellular organisms → Bacteria	4059	Open in IMG/M
3300026998\|Ga0208369_1000105	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3684	Open in IMG/M
3300026999\|Ga0207949_1000015	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5989	Open in IMG/M
3300027071\|Ga0209214_1000036	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5344	Open in IMG/M
3300027381\|Ga0208983_1009759	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1815	Open in IMG/M
3300027576\|Ga0209003_1009921	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1412	Open in IMG/M
3300027643\|Ga0209076_1031318	All Organisms → cellular organisms → Bacteria	1481	Open in IMG/M
3300027748\|Ga0209689_1182352	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300027862\|Ga0209701_10064722	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2323	Open in IMG/M
3300027903\|Ga0209488_10201948	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1497	Open in IMG/M
3300028536\|Ga0137415_10004238	All Organisms → cellular organisms → Bacteria	14195	Open in IMG/M
3300028536\|Ga0137415_10030185	All Organisms → cellular organisms → Bacteria → Acidobacteria	5338	Open in IMG/M
3300029636\|Ga0222749_10123296	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300029636\|Ga0222749_10183464	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1037	Open in IMG/M
3300031708\|Ga0310686_105546365	All Organisms → cellular organisms → Bacteria	1566	Open in IMG/M
3300031708\|Ga0310686_106367021	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3827	Open in IMG/M
3300031753\|Ga0307477_10008843	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6954	Open in IMG/M
3300031753\|Ga0307477_10069349	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2435	Open in IMG/M
3300031754\|Ga0307475_10003325	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9754	Open in IMG/M
3300031823\|Ga0307478_10027713	All Organisms → cellular organisms → Bacteria	4055	Open in IMG/M
3300031823\|Ga0307478_10131318	All Organisms → cellular organisms → Bacteria	1973	Open in IMG/M
3300031962\|Ga0307479_10113275	All Organisms → cellular organisms → Bacteria	2640	Open in IMG/M
3300031962\|Ga0307479_10172557	All Organisms → cellular organisms → Bacteria → Acidobacteria	2125	Open in IMG/M
3300032180\|Ga0307471_100094046	Not Available	2693	Open in IMG/M
3300032180\|Ga0307471_100325611	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1636	Open in IMG/M
3300032180\|Ga0307471_100516585	All Organisms → cellular organisms → Bacteria	1344	Open in IMG/M
3300032205\|Ga0307472_100097582	All Organisms → cellular organisms → Bacteria	2011	Open in IMG/M
3300032261\|Ga0306920_100244023	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2680	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.36%
Host-Associated	Host-Associated	1.64%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.36%
Plants	Host-Associated → Plants	1.64%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	89.34%
Loam	Environmental → Terrestrial → Soil → Loam	9.02%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.64%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	48.36%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.20%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.64%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	38.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	30.33%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	9.02%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.10%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.46%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024331	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026341	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026998	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF046 (SPAdes)	Environmental	Open in IMG/M
3300026999	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF044 (SPAdes)	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027381	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25617J43924_100059062	3300002914	Grasslands Soil	MSTEYIFKATKASCAAPSTRRSVQFLPALYIHALMLVILVISSRNVFTTAIRNVLLVLLR
JGI25617J43924_100729992	3300002914	Grasslands Soil	MSSEHISKTKRASCAAPSTQRSVQLLAALYIHALALVILVVFSRNAFSTAIRTTLLALLR
JGI25617J43924_100894112	3300002914	Grasslands Soil	MSAEHVSKTNRISCVAPSTRGSVQFLAVLYIHALALVILVVFSKNVFSTTIRSVLLPLV
Ga0070708_1000813622	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MNSEHISKAKTMSCAAPSTRRSVQFVAALYIHALALVILVVFSRNVFSTTIRTILLALLR
Ga0066704_105667541	3300005557	Soil	MSSEHISKTKRMSCVAPSTRRSVQFLAALYIHALALVILVVFSRNVFSTAIRT
Ga0066700_104303142	3300005559	Soil	SMSAEHVSKTKRISCVAPSTRGSVQFLAVLYIHALALVILVVFSRNVFSTTIRSVLLPLVR*
Ga0075434_1001453032	3300006871	Populus Rhizosphere	MSSKHVSEMTRISCAAPSTRRSVQFLAQLYIHALALVILVVFSRNVFSTAIRTTLLALLR
Ga0075426_101464612	3300006903	Populus Rhizosphere	MSSEHISKTKRTSCAAPSTRRSVQFLAAFYIHALALVILVVFSRNVLSTAIRTTLLALLR
Ga0099793_100044743	3300007258	Vadose Zone Soil	MSSEHISKTKRISCAASSTRGSVQFLVALYIHALALVILVVFSRNVFSTTIRTTLLPLLR
Ga0099794_103585142	3300007265	Vadose Zone Soil	MSSEHVSEMKRVSCAAPSTGRWVQYITALYIHALALVILVVFSRNVFSTTIRTT
Ga0099829_103167632	3300009038	Vadose Zone Soil	MSTEYIFRTNKASCPAPSTRRSVQFLAALYIHAVMLVILVIFSRNVFSTAIRNVLLPLLR
Ga0099792_104243062	3300009143	Vadose Zone Soil	SMSPEYVSEKKRGSCAAPSTRRSVQYLTALYIHALALVILVVFSRNVLSTTIRTTLLAVLR*
Ga0137392_100495911	3300011269	Vadose Zone Soil	MSSEQISKTKRISCVAPSTRRSVQFLAALYIHALALVILVVFSRNVFSTAIRTTLLPLLR
Ga0137392_107895702	3300011269	Vadose Zone Soil	MSSEHISKTKRISCAAPSTRGSVQFLVALYIHALALVILVVFSRNVFSTTIR
Ga0137389_109069962	3300012096	Vadose Zone Soil	MSSEHISKTKRISCAPPSRRRSVQFLGAVYIHALALVILVVFSRNVFST
Ga0137388_106641571	3300012189	Vadose Zone Soil	MSTEYIFRTNKASCPAPSTRRSVQFLAALYIHAVMLVILVIFSRNVFSTA
Ga0137382_100089293	3300012200	Vadose Zone Soil	MSSEHISKTKRISCAPPSTRRSVQFLAAFYIHALALVILVVFSRNMFSTAIRTVFLALLR
Ga0137363_100255212	3300012202	Vadose Zone Soil	MSAEHVSKTKRISCVAPSTRGSVQFLAVLYIHALALVILVVFSKNVFSTTIRSVLLPLVR
Ga0137363_100338393	3300012202	Vadose Zone Soil	MSSEHVSEMKRVSCAASSTRRSVQFLVALYSHALALVSLAVFSRNVFSTVIRTAFLALLR
Ga0137363_112828281	3300012202	Vadose Zone Soil	KTKRASCAAPSTQRSVQLLAALYIHAFALVILVVFSRNAFSTAIRTTLLALLR*
Ga0137399_100993723	3300012203	Vadose Zone Soil	MSSEHISKTKRTSCAAPSTRGSVQFIVALYIHALALVILVVFSRNVFSTTIRTTLLPLLR
Ga0137399_102738602	3300012203	Vadose Zone Soil	MSSECVSEMKRVSCAAPLTRRSVRFLAQLYIHAFALVILVVFSRNVFSTTIRTTLLTLLR
Ga0137399_102940391	3300012203	Vadose Zone Soil	VKDAGGSMSSEHVSEMKRVSCAAPSTRRSVQFLTALYIHALALVILVVFSRNVLSTTIRTTLLAVLR*
Ga0137381_100680482	3300012207	Vadose Zone Soil	MSPEYVSEKKRGSCAAPSTRGSVQFLAVLYIHALALVILVVFSRNVFSTTIRSVLLPLVR
Ga0137377_109325111	3300012211	Vadose Zone Soil	MSSEHVSEMKRVSCAAPSTRRSVQYLTALYIHALALVILVVFSRNVFSTTIRTTLLAVLR
Ga0137386_102163151	3300012351	Vadose Zone Soil	MSAEHVSKTKRISCVAPSTRGSVQFLAVLYIHALALVILVVFSRNVFSTTIR
Ga0137360_101690454	3300012361	Vadose Zone Soil	MSSEHISKTKRISCVAPSTQHSVQFLAALYIHALVLVILMVSSRNVFSTAIRATLLPLLR
Ga0137361_106659772	3300012362	Vadose Zone Soil	MSSEHVSEMKRVSCAAPSTRRSVQFLTALYIHALALVILVVFSRNVFSTTIRTTLLAVLR
Ga0137390_101583391	3300012363	Vadose Zone Soil	MSSEHISKTKRTSCAAPSTRGSVQFLVALYIHALALVILVVFSRNVFSTTIRTTLLPLLR
Ga0137397_100076704	3300012685	Vadose Zone Soil	MSAEHVSKTKRISCVAPSTRGSVQFLAVLYIHAFALVILVVFSRNVFSTTIRSVLLPLVR
Ga0137396_100148975	3300012918	Vadose Zone Soil	MSSEHISKTKRASCAAPSTQRSVQLLGALYIHALALVILVVFSRNAFSTAIRTTLLALLR
Ga0137394_109172882	3300012922	Vadose Zone Soil	MSPEHVSEMKRVSCAAPSTRRSVQFLTALYIHALALVILAVFSRNVFSTVIRTAFLALLR
Ga0137359_100398432	3300012923	Vadose Zone Soil	MSSEHISKTKRASCAAPSTQRSVQLLAALYIHAFALVILVVFSRNAFSTAIRTTLLALLR
Ga0137359_104551681	3300012923	Vadose Zone Soil	MSAEHVSKTNRISCVAPSTRGSVQFLAVLYIHALALVILVVFSRNVFSTTIRSVLLPLVR
Ga0137419_105243371	3300012925	Vadose Zone Soil	VKDARGSMSPEYVSEKKRGSCAAPSTRRSVQFLTALYIHALALVILVVFSRNVFSTTIRTTLLTLLR*
Ga0137419_108953532	3300012925	Vadose Zone Soil	VKDAGGSMSSEHVSEMKRVSCAAPSTRRSVQYLTALYIHALALVILVVFSRNVFSTTIRTTLLAVLR*
Ga0137416_106549612	3300012927	Vadose Zone Soil	MSSEHVSEMKRVSCAAPSTRRSVQFLTALYLHALALVILVVFSRNVLSTTIRTTLLAVLR
Ga0137418_100192727	3300015241	Vadose Zone Soil	SCAAPSTQRSVQLLAALYIHALALVILVVFSRNAFSTAIRTTLLALLR*
Ga0137409_100223677	3300015245	Vadose Zone Soil	MSPEYVSEKKRGSCAAPSTRRSVQFLTALYIHALALVILVVFSRNVFSTTIRTTLLAVLR
Ga0179592_100340923	3300020199	Vadose Zone Soil	MSAEHVSKTKRISCVAPSTRGSVQFLAVLYIHALALVILVVFSRNVFSTTIRSVLLPLVR
Ga0210407_100096656	3300020579	Soil	MSSEHISKTKPTSCAAPSTRRSVQFLAALYIHALTLVILVVFSRNVFATAIRTTLLPLLR
Ga0210407_100161192	3300020579	Soil	MSSEHISKTKRTSCAAPSTRRSVQFLAAFYIHALALVVLVVFSRNVLSTAIRATLLALLR
Ga0210407_100516292	3300020579	Soil	MSSEHISKTKRMSCVAPSTRVSVQFLAALYIHALALAILVVFSRNVFSTAIRTTLLRLLL
Ga0210407_106835192	3300020579	Soil	RIMSSEYPSRAKRIFCAAPSTRRSVQFLVAAYIHALMLVILVIFSRNVFSTVIRTALSPLLR
Ga0210403_100364352	3300020580	Soil	MSSEHISKTKPTSCAAPSTRRSVQFLAALYIHALTLVILVVFSRNVFSTAIRTTFLPLLR
Ga0210403_100429232	3300020580	Soil	MSSEHISETKRVSCPAPSTRRSVQFLVTLYIHALALAILVVFSRNVFSTAIRTALLPLLR
Ga0210403_100569405	3300020580	Soil	MSSERISKTKRISYAPPSTRRSVQFLAGLYIHALALVILVVFSRNVFSTAIRTTLLALLR
Ga0210403_100705142	3300020580	Soil	MNSEHISKTKRTSCAAPSTRRSVQFLAALYIHALALVILVVFSRNVFSTAIRTTLLPLLR
Ga0210399_100130983	3300020581	Soil	MSSEYPSRAKTICCAAPSTRRSVQFLVAAYIHALMLVILVIFSRNVFSTAIRTALSPSLR
Ga0210399_100132466	3300020581	Soil	MSSEHISKTKRVSCPAPSTRRSVQFLVTLYIHALALAILVVFSRNVFSTAIRTALLPLLR
Ga0210399_100547972	3300020581	Soil	MSSEHISKMKRTSCAAPSTRRSVRFLAALYIHALALVILVVFSRNVFSTAIRTTFLPLLR
Ga0210399_102104081	3300020581	Soil	MSSEHISKTKRMSCVARSTRVSVQFLAALYIHALALAILVVFSRNVFSTAIRT
Ga0210399_102475993	3300020581	Soil	MSSEDMSETKGTSCAAPSTRRAVQFLAGLYIHALAVVILVVFSRNVFSTAIRTALSPLLR
Ga0210399_103335021	3300020581	Soil	VKDARGSMSSEHISETKRTSCAAPSTRRSVQFLAAFYIHALALVILVVFSRNVLSTMIRTTLLALLR
Ga0210399_112596932	3300020581	Soil	MSSEHISKTKRMSCVAPSTRVSVQFLAALYIHALALAILVVFSRNVFSTAIRS
Ga0210401_100017235	3300020583	Soil	MSSEHISKTKRVSCVAPSTRRSVQFLAALYIHALALVILVVFSRNVFSTAIRNTLLPLLR
Ga0210401_100804352	3300020583	Soil	MSSEHISKTNPTSCAAPSTRRSVQFLAALYIHALTLVILVVFSRNVFATAIRTTLLPLLR
Ga0210401_101042033	3300020583	Soil	MSSEHISKTKRTSCGAPSTRRSVQLLVALYIHALALVILVVFSRNVFSTAIRATLLPLLR
Ga0215015_109680262	3300021046	Soil	MSTEYIFRMNKASCPAPSTRRSVQFLAALYIHAVMLVILVIVSRNVFFAAIRNVLLPLLR
Ga0210406_100348933	3300021168	Soil	MSSEDMSKTKRTSCAAPSTRREVQFLAGLYIHALALVILVVFSRNMFSTAIRTALGPLIR
Ga0210406_100575785	3300021168	Soil	MSSERNSKTKRISYAPPSTRRSVQFLAALYIHALALVILVVFSRNVFSTAIRTTLLALLR
Ga0210406_104006461	3300021168	Soil	MSSEHISKTKPTSCAAPSTRRSVQFLAALYIHALALVILVVFSRNVFSTAIRTTLLPL
Ga0210406_112665011	3300021168	Soil	MSSEHISKPKRTSCAGPSTRRSVQFLAALYIHALALAILVVFSRNVFSTAIRTTLLRL
Ga0210400_100196946	3300021170	Soil	MSSEHISKTKRTSCAAPSTRRSVQFLAALYIHALALVILVVFSRNVFSTAIRTTLLPLLR
Ga0210405_100025712	3300021171	Soil	MSSEYPFRAKTIVCAAPSTRRSVQFLVAAYIHALMLVILVIFSRNVFSTAIRTALSPLLR
Ga0210405_100140593	3300021171	Soil	MSSEHVSKTKRTSCAAPSTRRSVQFLAAFYIHELALVILVVFSRNVFSTAIRTTLLALLR
Ga0210405_100287382	3300021171	Soil	MSSERISKTKTISCAPPSTRRSVQFLAALYIHALVLAILVVFSRNVFSTTIRTMLSPLLR
Ga0210405_102149573	3300021171	Soil	MSSEHISKAKRSSCAPPSTRRSVQFLVALYIHALALVILVLCSRNVFSTAIRTTLLP
Ga0210408_102819623	3300021178	Soil	YIFETHKASGTAPLTRRSVQFLAALYIHAFMLVILVISSRNVFSTAIRNVLLALLR
Ga0210408_104985401	3300021178	Soil	MSSEDMSKTKRTSCAAPSTRRAVQFLAGLYIHALALVILVVFSRNMFSTAIRTALGPLIR
Ga0210396_100094062	3300021180	Soil	MSSEYPSRAKTIFCAAPSTRRSVQFLVAVYIHGLMLVILVIFSRNVFSTAIRTALSPLLR
Ga0210396_101035464	3300021180	Soil	MSSEYPSRAKTIVCAAPSTRRSVQFLVAAYIHALMLVILVIFSRNVFSTAIRTALSPLLR
Ga0210388_101439631	3300021181	Soil	MISEYISKTKRTSCAAPSTRRSVQFLAALYIHALALVVLVVFSRNVFSTTIR
Ga0210397_102012541	3300021403	Soil	MSAEYPSRAKTIVCAAPSTRRSVQFLVAAYIHALTLAILVIFSRNLFST
Ga0210389_100567755	3300021404	Soil	MNSEHISKTKRTSCAAPSTGRSVQFLAALYIHALALVILVVFSRNVFSTTIRTMLLALLR
Ga0210389_101006702	3300021404	Soil	MNSEHISKTKRTSCAAPSTRRSVQFLAALYIHALALVILVVFSRNVFSTTIRATLLALLR
Ga0210386_101415362	3300021406	Soil	MSSERISKTKRISYAPPSTRRSVQFLAALYIHALALVILVVFSRNVFSTAIRTTLLALLR
Ga0210386_101524734	3300021406	Soil	MNSEHISKTKRTSCAAPSTRRSVQFLAALYIHALALVILVVFSRNVFSTAIRT
Ga0210384_100013271	3300021432	Soil	MSSEHISETKRFSCPAPSTRRSVQFLVTLYIHALALAMLVVFSRNVFSTAIRTALLPLLR
Ga0210384_1001905311	3300021432	Soil	MSSEYPSRAKTICCAAPSTRRSVQFLVAAYIHALMLVILVIFSRNVFSTAIRTALSPLLR
Ga0210402_100108955	3300021478	Soil	MSSEYPSRAKTICCAAPSARRSVQFLVAAYIHALMLVILVIFSRNVFSTAIRTALSPSLR
Ga0210402_101431513	3300021478	Soil	MSSEHISKTKRTSCGAPSTRRSVQFLAALYIHALTLLILVVFSRNVFSTAVRTTLLPLLR
Ga0210410_100769733	3300021479	Soil	MSSEHISKTKRMSCVAPSTRLSVQFLAALYIHALALAILVVFSRNVFSTGIRTTL
Ga0210409_103245973	3300021559	Soil	MSSEDMSKTKRTSCAARSTRRAVQILAGLYIHALALVILVVFSRNMFSTAIRTALGPLIR
Ga0247668_10549972	3300024331	Soil	GSMSSKHVSEMTRISCAAPSTRRSVQFLAQLYIHALALVILVVFSRNVFSTAIRTTLLALLR
Ga0207684_1000128525	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSSEHISKTKRTSCAAPSTRRSVQFLAALYIHALALVILVVFSRNVFSTAIRTVLLPLIR
Ga0207693_101018982	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSSEHISKTKSTSCAPPSTRRSVHFLAQLYIHALVLVILMVFSRNVFSTTIRSVLLLLLR
Ga0207664_116605221	3300025929	Agricultural Soil	MSWLRFRYVSERKRIASPAPSTRRSVQFLAALYIHTLLLVILLVFSRNMFSTAIRSTL
Ga0207665_102896181	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MSSEDMSKTKRTSCGAPSTRRAVQFLAGLYIHALALVILVVFSRNMFSTAIRTALGP
Ga0207665_104526811	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MSSEDMSETKRTSCAAPSTRRAVQLLAGLYIHALALVILVVFSRNMFSTAIRTAL
Ga0209240_10049749	3300026304	Grasslands Soil	MSSEHISKTKRISCVAPSTRRSAQFLAALYIHALVLVILVVFSRNVFSTAIRTTLLPLLR
Ga0257151_10181542	3300026341	Soil	MSSEQVSEMKRVSCAAPSTRRSVQYLTALYIHALALVILVVFSRNVFSTTIRTTLLAVLR
Ga0209648_100013867	3300026551	Grasslands Soil	MSAEHVSKTNRISCVAPSTRGSVQFLAVLYIHALALVILVVFSKNVFSTTIRSVLLPLVR
Ga0209648_100256711	3300026551	Grasslands Soil	MSSEHISKTKRISCVAPSTQRSVQFLAALYIHALVLVILMVSSRNVFSTAIRATLLPLLR
Ga0209648_100399901	3300026551	Grasslands Soil	MSSEHISKTKRISCALPSTRRSVQFLAALYIHALALVSLMVFSRNVFSTAIRATLLPLLR
Ga0208369_10001053	3300026998	Forest Soil	MSSEHISKTKRTSCAAPSTRRSVQFLAAFYIHALALVVLVVFSRNVLSTAIRATLLALVR
Ga0207949_10000153	3300026999	Forest Soil	MSSEHISKTKRTSCAAPSTRRSVQFLAAFYIHALALVILVVFSRSVLSTAIRTTLLALLR
Ga0209214_10000361	3300027071	Forest Soil	MNSEHISKAQTMSCAAPSTRRSVQFVAALYIHTLALVILVVFSRNVFSTTIRTILLALLR
Ga0208983_10097592	3300027381	Forest Soil	MSSEQVSEMKRVSCAAPSTRRSVQFLTALYIHALALVILVVFSRNVFSTTIRSTLLALLR
Ga0209003_10099211	3300027576	Forest Soil	MSSEHISEAKRISCVARSTRRPAQFLVTLYIHALALVILVVFSRNVFSTTIRTTLLPLLR
Ga0209076_10313183	3300027643	Vadose Zone Soil	MSSEHISKTKRASCAAPSTQRSVQLLAALYIHALALVILVVFSRNAFSTAIRTT
Ga0209689_11823521	3300027748	Soil	SMSAEHVSKTKRISCVAPSTRGSVQFLAVLYIHALALVILVVFSRNVFSTTIRSVLLPLV
Ga0209701_100647225	3300027862	Vadose Zone Soil	MSSEQISKTKRISCVAPSTRRSVQFLAALYIHGLVLAILVVFSRNVFSTAIRTTLLPLLR
Ga0209488_102019481	3300027903	Vadose Zone Soil	ARGSMSPEYVSEKKRGSCAAPSTRRSVQYLTALYIHALALVILVVFSRNVLSTTIRTTLLAVLR
Ga0137415_100042382	3300028536	Vadose Zone Soil	MSSEHVSEMKRVSCAAPSTRRSVQFLTALYIHALALVILVVFSRNVLSTTIRTTLLAVLR
Ga0137415_100301852	3300028536	Vadose Zone Soil	MSSEHISKTKRTSCAAPSTRGSVQFLAALYSHALALVILVVFSRNVFSTTIRTTLLPLLR
Ga0222749_101232962	3300029636	Soil	MSSEYPFRAKTIVCAAPSTRRSVQFLVAAYIHALMLVILVIFSRNVFSTAIR
Ga0222749_101834642	3300029636	Soil	MSSEHISETKRFSCPAPSTRRSVQFLVTLYIHALALAILVVFSRNVFSTAIRTALLPLLR
Ga0310686_1055463653	3300031708	Soil	MSSEHISKTKRTSCAAPSTRRSVQFLAAFYIHALALVILVVFSRNVLSTTIRTTLLALLR
Ga0310686_1063670212	3300031708	Soil	MSSEHISKTNRTSCAARSTRRSVHFLAVLYIHAFAFVILVVYSRNVFSTAIRTTLLPLLR
Ga0307477_100088434	3300031753	Hardwood Forest Soil	MSSEHISKTKRMSCVAPSTRVSVQFLAALYIHALALAILVVFSRNVFSTAIRTTLLPLLR
Ga0307477_100693491	3300031753	Hardwood Forest Soil	MSSECISKMKRVSSATPSERRSVQFLAALYIHALALVILVVFSRNVFSTAIRTTLLPLLR
Ga0307475_100033256	3300031754	Hardwood Forest Soil	MSSEHISKKNGISCVPPSRRRSVQFLAALYIHALVLTILMVFSRNVFSTAIRTTLLPLLR
Ga0307478_100277134	3300031823	Hardwood Forest Soil	MSTEHISKTKRISSAAPSTRPSVQFLAALYIHALVLAILVVFSRNVFSRAIRTVILPLLR
Ga0307478_101313182	3300031823	Hardwood Forest Soil	MSTEYIFKATKASCAAPSTRRSVQFLTALYIHVLMLAILVISSRNVFSTAIRNVLLALLR
Ga0307479_101132751	3300031962	Hardwood Forest Soil	MNSEHISKTKRTSCAAPSTRRSVQVLVALYIHASALVILVVFSRNVFSTAIRTTLLPLLR
Ga0307479_101725572	3300031962	Hardwood Forest Soil	MNSEHVSKTKRISSAAPSTRRSVQFLAALYIHALVLVILVVFSRNVLSTAIRTVILPLLR
Ga0307471_1000940464	3300032180	Hardwood Forest Soil	MSSEYISKTKRTSREAPSTRGSVQLLVALYIHALALVILVVFSRNVFSTTIRTTLLPLLP
Ga0307471_1003256112	3300032180	Hardwood Forest Soil	MSSEHISKAKRMSCVAPSTRRSVQFLAALYIHVLALVILVVFSRNVFSTAIRSTLLTLLR
Ga0307471_1005165852	3300032180	Hardwood Forest Soil	MSLERISKTNTTSCAAPSTRRSVQFLAALYIHALALVILVVFSRNLFSTTIRTMLLALVR
Ga0307472_1000975822	3300032205	Hardwood Forest Soil	MSSEDMSKTKRTSCGAPSTRRAVQFLAGLYIHALALVILVVFSRNMFSTAIRTALGPLIR
Ga0306920_1002440232	3300032261	Soil	MNSEHIHISKTKRKSCVAPSTRRSVQFLAALYIHALALVILVVFSRNVFSTAIRTTLLPLLR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070951

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences