Scaffold Ga0210405_10000461

Overview

Basic Information

• Taxon OID: 3300021171
• Scaffold ID: Ga0210405_10000461
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54349
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (89.13%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003278	Metagenome / Metatranscriptome	496	Y
F006902	Metagenome / Metatranscriptome	362	Y
F013683	Metagenome / Metatranscriptome	269	Y
F088596	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210405_1000046135	F006902	N/A	MFGMALALERGAMLRINCEAVMWKITTRGFTLEEVLIMAAMNLLTSAETAAKREKRASPK
Ga0210405_1000046137	F003278	GGAG	MLKISLVDNARQRRVIVEGKLLAPWVAEFRNACQEARADLDGRELVVEMKCVTTISQEGENVILELINGGIRFRCHGLFAKHVVKELTRRASRNLGTRAGD
Ga0210405_1000046141	F088596	GAG	MLTNQEPDWNIDGLTDTEIYAAIHYLEPDPRNAPEQDPNDQDQDVGVVICVCLYIVMSVCLAFLWFYWR
Ga0210405_1000046144	F013683	AGGA	MEFEECDFIRNPVVQNEIFFLESKCVFSSLSILAKSIEKLVELEELHRTQCRTVERRCMT