Scaffold Ga0210405

Basic Information
Taxon OID	3300021171 Open in IMG/M
Scaffold ID	Ga0210405_10000237 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	77834
Total Scaffold Genes	96 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	83 (86.46%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

77834

Total Scaffold Genes

96 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

83 (86.46%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F004291	Metagenome / Metatranscriptome	445	Y
F012484	Metagenome / Metatranscriptome	280	Y
F013208	Metagenome / Metatranscriptome	273	Y
F046497	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210405_1000023720	F013208	N/A	MEDIRGRVEELRREIAEIQKRNLAFLQMPRADFIAFQDHERRQQRLRAIMEELSSMTDWKKP
Ga0210405_1000023731	F012484	AGGGGG	MGNLSSALQQLRAERKRAHARVESIDQAILVIESLNGSGTLGNANQPTRIISAASRRKMAQAQRARWARARKESQPVGACALMESLNDHPRLG
Ga0210405_1000023773	F046497	GGAGG	VRLRGVSRDGCGKRASLAFVMLLCVSTTRAQGPAPETAPPLFPGGGLISYNSILTTRGLTPESPANIPATARPTFAHEGEFNFTWGFYRNFDLTILVPIVTNHFDMVSAPSVGGPGLGDAMVLVKYRFYRRDSQRGTTQASFTLGPKIPIGRTDLTGSTEGLLPASLQPGSGSTDLFLAANWTYTGLFNFKRLVADEDFHTLLRSQGTQQTRLGSDIESRFWLSYRPYESKNVAREWFIGPVLTWLYAQDDRIAGITQNGSGGDVLLAGITTYIGVRPGMHTWIGMDWDVAHSTGGLFMPVRRHISFGITQQFRLHL
Ga0210405_1000023774	F004291	AGGAGG	MKTKKVAMLVLLGSMVVVLVAQAQIKHIEMRVEGMT
Ga0210405_1000023775	F000092	GAG	VKQHLGRQSGVQTVQASLLDGKVDVTPKEDGQIDPAQLLKATYDSGVSVAELDMTARGKIVKDSSGNFAIQVAPNQSFALAPNELSKGLEPLVDAATFVTVRGQLYKKPAGKKKADASAPLKLQILEVQKKE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210405_10000237

Overview

Ecosystem & Geography

Associated Families

Sequences