NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10023167

Scaffold Ga0210400_10023167


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10023167 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4832
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007233Metagenome / Metatranscriptome355Y
F017896Metagenome / Metatranscriptome238Y
F033134Metagenome178Y
F037842Metagenome / Metatranscriptome167N
F044617Metagenome / Metatranscriptome154N
F083353Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_100231671F083353N/AVGRRVPGWAGFVAAPVVVFLTICSYYAYTRHYRTVSGNAASSPVDSAVLQQSTDPQALLSSADHFYWLNNGP
Ga0210400_1002316714F017896N/ARYRVDTEKLQKAVAKEFAAKRDKKTIKPKGRTAAA
Ga0210400_100231672F044617AGGAGMSTSPQPSREKPSVTAITAEERRKLDQRVRDKHQRLRNRYPEIYGKVVDWIHHYIEDGTLYVCIRFQDKTDFALEFNPQIVRVGTELCDSATDDFDVIRNYYREERE
Ga0210400_100231675F037842AGGAGGLKQKTVKARGEGVEYPALTGKVIRQVRFVNDEDYTALTIEFDDSTLVSFRFKASIAFSIDPELSTVKGGNIVKWRELKTRPVMRQVAGR
Ga0210400_100231676F033134AGGAMKREQESKQLITFSSLHIEVLGPRELGNSQQAIRGVTEFLHGVELDVGKLLRERAERLPILEEFRLRFG
Ga0210400_100231677F007233GGAGMANRKQKEHQRQSNLDTFSDGIKGKVLEAISISNELECRYISLEFEDETELTISLDTRLTGKLELFDCKTGNHRLVRKIGLIPDDAPVWRPKD
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