NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210400_10000157

Scaffold Ga0210400_10000157


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10000157 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)91264
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (85.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005792Metagenome / Metatranscriptome390Y
F025234Metagenome / Metatranscriptome202Y
F034148Metagenome / Metatranscriptome175Y
F060162Metagenome / Metatranscriptome133Y
F082997Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0210400_1000015712F082997GGAGMAVSTPAAYGMYPHDVELHQVVQTLNQSGFGKEDICMMVSPSHPIATIVRECNILNSRPEASDVAASLIGWFMKFGAVMIPTVGLYIRSQAFLHALGVRTDSPASRGNSRALVGLGFSESDALRFERQLREMGVLIYVACPESEKTTRAMELLRRTGARETATLEKEVALEAVA
Ga0210400_1000015725F060162GGAGGMNMNVGWQELYQAAMLELRAEELPRRIDAAEKAIQQRIVELSRNDSSSEEERRAIEDALRGLRALASTECKPPLSANSGLAQHKTTTPLP
Ga0210400_1000015732F025234GAGMRKDDLMKADLFSEIVLLGVGVAIAVTLVMVVMAALTSAAAFQ
Ga0210400_1000015741F034148AGGAGMNKIRLALSTVALTGALLFASQQTLAQSASDSARNPTAQQQPMQPDNQTSAVNAASEKMFKGKIVQSGDKLVLTAADGTITYQLDDQQKAQVFLNKSVKVTGVLDASTGTIRVKAIDPA
Ga0210400_1000015750F005792AGGAGGMSNQHSVTKRHRRPKSDKRADYTARTMAAVKQLEKAAKEKTK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.