NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10000083

Scaffold Ga0210400_10000083


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10000083 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)127381
Total Scaffold Genes123 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)94 (76.42%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049883Metagenome146Y
F050698Metagenome / Metatranscriptome145Y
F066165Metagenome / Metatranscriptome127Y
F075253Metagenome / Metatranscriptome119Y
F087825Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_10000083100F075253N/AVFDLLPSFGHLDPRVAVLLLMVLLLGAAIPLALGWTKLLPPEREPFSRPDLPRHRSPRDLFAIFLLVNVSLSLIAAVPRIADALHLDWLVQFLPNSWPEHVGMILLIWLVFVPALAAAYAAVRPNPIRKHLIIGGILVLILWLLSPTLLGSLASVP
Ga0210400_10000083102F087825AGGMTSEATGRAPFMSLLELVERYRKLVHAFGDPVAISNFGFSVEEANRLFSGFDEDYHISRFFNFTEESGAQRHSINSFPATHVAIDPEIESIL
Ga0210400_1000008386F049883GGAGGMQYKKTQVAPKYNDRPPLQKVVLIPFCERPGYQTLKPDLKSIVSAAHKLPAEVAPPARVWRSLRVQLEKEGILSRPVKGRLEEHTRFPLFRN
Ga0210400_1000008390F050698GGAMLIGMPDHAHSVDEPGVNTMKCPIHGRWLYRRKNTDAEPRVRWFCSIEDCHYGYLADIKAIRSGPRANSRP
Ga0210400_1000008392F066165GGALCAEITLNRFQLSVLDTEILYVPERFTVLGMAKILHKSICLASSDSLDVKVSNEINLCVPALRFESALADVVVAGRARKGEVVGEQHIERAQILLFPRRVPLTDDLLAR
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