Scaffold Ga0210400_10000047

Overview

Basic Information

• Taxon OID: 3300021170
• Scaffold ID: Ga0210400_10000047
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 198819
• Total Scaffold Genes: 173
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 143 (82.66%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F000529	Metagenome / Metatranscriptome	1047	Y
F001069	Metagenome / Metatranscriptome	787	Y
F003444	Metagenome / Metatranscriptome	486	Y
F004291	Metagenome / Metatranscriptome	445	Y
F034523	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_10000047129	F034523	GAG	MPNSMKNRWIIAGIAAVSILAGAATAAEHSFNPIKWIKKDPAPTASEQLAKNSDMEKKLTTELQAELPPRTSLKNACEQFKALDDCVAALHVSRNLKIKFNCLKWDVNGTKPAGDVKSCEAPARDRGMSLRTAIRVLKPDADAKNEAKSAERRAKEDIKDASS
Ga0210400_10000047145	F000529	GAGG	MFSAMLFAISIVALTQFALYYWRAVLTGVAAQPVSDRVLAAAHVENGRFNAADFEKLSGLHQLTPDLSPNRGGLGLVRLYYRVIGAVGSLADNRIPALAVWSEQERILCARYAAVQIDRRLQANLALAASLRSC
Ga0210400_1000004724	F003444	AGGAG	MNPHLTLSLAISVTLSTLATPLRAANEPRAGSTEKMTALWTNENLEKLRPLAPISIVGQPNKPDDSTTAAVPRPYLEAQDSEWYAEKAAKLRDELERRKAQLGRYRQAIEGARSLKTITGGINLDEGDIGITPESGIEILQQRVNEAQSQLDALEDLARHNDIPPGTLRGQ
Ga0210400_100000475	F004291	AGGAGG	MNTQRLALLALLGSMLVPVAQAQIKHIEMRVEGMT
Ga0210400_100000476	F000092	GAG	VKQHLGRQSGVQTVEVSLIDGKVEVTPKEDGQIDPAQLLKATYDSGVTAAEMYMTARGKIVKGDSGELALQVKPNQSFALTSNELSKGLEALADTQAMVTVRGQLYKKPAGKKKADLSIPLKLLILEVQKKE
Ga0210400_1000004775	F001069	AGGAG	MQYMPGYTVQCINPDCQARGHWVRADVVGSEFCPSCGDFLRHVPPPLTPHFRMRPRPLAARPPLRPRPR