Scaffold Ga0210400_10000016

Overview

Basic Information

• Taxon OID: 3300021170
• Scaffold ID: Ga0210400_10000016
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 337035
• Total Scaffold Genes: 289
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 233 (80.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002309	Metagenome / Metatranscriptome	572	Y
F003732	Metagenome / Metatranscriptome	471	Y
F011161	Metagenome	294	Y
F032543	Metagenome / Metatranscriptome	179	Y
F101813	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_10000016124	F101813	AGGA	MTPDNSCTTTTATSVLPHCQQRTASGRRCRMAISDPDSGLCAKHAALHQRDLDQADLAASLVGDIQEFRSAADINHSLGELYKLQARNKITPRRAAVMAYTANLLLRTLPAIEHEVYPEGKPGPEIIIDLPCFLNKHAKPKTENPTYQDLRS
Ga0210400_10000016204	F003732	GGGGG	MSIYEKFLFVWLLVVVGFGFVFRHFWLSTVYALNKVVALNLVFMAALAKLAAGLFGAHFF
Ga0210400_10000016240	F002309	GGGGG	MDHFTTENWIDFVNQAVDANEQQLMERHLKQGCKRCTKTVSIWQKVQQSVASEANYQPPEHAVRIAKATFAGAALAGQGQGAGGRIKVLFDSFLHPVFEGARSASAGTRQMLYRADPFQIDIQVEPKPGANRIVVTGQLLDLSNPGIIGRDARIVLSNMRGQVVHAVTNQFGEFSGEIENSGDLQMTFAAPGSQPIVISLRDALGTLPEDVQ
Ga0210400_10000016286	F032543	GGAG	MTCKQGPGCWCAELPHVPMPADEEGCLCRNCLLAKIEGLQNSAKTKEA
Ga0210400_1000001647	F011161	AGGAG	MKKTAMAFASLAMLLMNCNAAQAQKSAPKPAPVTIAPDLTKLNIEKMLQQVQTTSVQPSAQDASPLQVVAEFLQLQPGQVSALEQLLQARQAALVPLFQTAQTLVQQLAVLLNSGGNPAQVGVLVIQIHALQQQMAQTQQAFLTQFVAILDAEQLQKLQAVQIAAQLQPILPAFQPIFLF