Scaffold Ga0210406_10000561

Overview

Basic Information

• Taxon OID: 3300021168
• Scaffold ID: Ga0210406_10000561
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50132
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (82.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075253	Metagenome / Metatranscriptome	119	Y
F079111	Metagenome / Metatranscriptome	116	Y
F087825	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210406_1000056119	F079111	AGG	MKTTDQGRKWMWWFLGIVVLTQVYFVRELLAAFALFAVLFAVIATFAVSVYVAQKGWELAVARIAESNHVAVRVARRSVNKVEVLARRGVSAAGELARRPLQRPESNGPLSKAA
Ga0210406_1000056147	F087825	AGG	MTAEATRRAPFMSLQELTDRYRKLVHAFGDPVAISKFGFSVEEAERLFSSFEEDYHIGRFFLFTEESGVQPHSINGFPATHVAIDPEIESIL
Ga0210406_1000056149	F075253	N/A	VHDLLPSFGHLNPRVAVLLLMALLLGAALPLALGWMKILPPEREPFAPPDKPQSSPLNDHDRFAIFLLVNVTLSLLVAIPGVVDSLHLDWLAQFLPGSWAEHIEMGLVIWLVFIPALAAAYAAIRPNPLRAHLIAGGILVLALWLLSPTLLASLATQP