Scaffold Ga0214163_1035422

Overview

Basic Information

• Taxon OID: 3300021141
• Scaffold ID: Ga0214163_1035422
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1387
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F039131	Metagenome / Metatranscriptome	164	Y
F105175	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214163_10354222	F039131	N/A	MAQDEIYGLEGYFQRKYTKLIVDQINNFEFPDDWTPKQVIDYITYKIDRK
Ga0214163_10354224	F105175	AGGAG	MTDGINLDGFTAPKVEAPGSWNGEQYAADPASAFPASDVSNQASAQGPK
Ga0214163_10354225	F001280	AGGA	MCVECGCEAFGSETGIVPVTVVDVSTDGEAGLTLNMTATPDQRERFINE
Ga0214163_10354226	F001176	GAG	MSDNGTGMDTPPNSTPSGAVTSQEVARKNPSQKQFKSGIPTKRIPNKIDTNKHGIRRETSIVPKKTKPKKV