NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214206_1009657

Scaffold Ga0214206_1009657


Overview

Basic Information
Taxon OID3300021131 Open in IMG/M
Scaffold IDGa0214206_1009657 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1406
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044967Metagenome153N
F065781Metagenome / Metatranscriptome127Y
F085390Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0214206_10096573F065781GGAGMTSGDQAGWWAIAYLLMVGAAAYFTIFMIVFSFVKKLFWS
Ga0214206_10096575F085390GGAGMNDFLQALAPFAYGFAVGYFWHPLWTLCKRIVEEAQLARQEWRKSNANRND
Ga0214206_10096576F044967GGAGGMQIEMIEQTKDRFDLEQEILQCWNITDDIKSYVAESATSEEFAALAQYYERKFDRLWNTFESMVHERKM

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