Scaffold Ga0194133_10003101

Overview

Basic Information

• Taxon OID: 3300021091
• Scaffold ID: Ga0194133_10003101
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24200
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (50.79%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000744	Metagenome / Metatranscriptome	909	Y
F007569	Metagenome / Metatranscriptome	348	Y
F029416	Metagenome / Metatranscriptome	188	Y
F058099	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194133_1000310110	F007569	N/A	MNFTPEQYKLIYNSVRRYQIEKTILNSDEYYQCNEILDGLFDSVYTQKAEQPT
Ga0194133_1000310121	F000345	GGA	MTEPNEFGKAMQEWWDSDACKQLQKSHKESVERAVGKYFMLSEEDKLDMVQAICYIMCKAESEGTSHRGLMDALGVYPSGFWIDGLMEVHNSLWSYYHNKKREQELKDDLDALEEFIK
Ga0194133_1000310132	F000744	GGA	MTETQVNLNVHEIGILLSAIQNLEIVDERHIARDYGSAPALYNKLYTLWEQMDRSQVGLVNDVVPSF
Ga0194133_1000310155	F029416	GAG	MTDTLSRNIYRALFSEEQWDLIYAMVGHALDDDDFDPEDVYTIRNKIHAIFGD
Ga0194133_1000310161	F058099	N/A	MTKQLLISQLRQGKNGNDILHILDVLCNGMDSSESSQDNVPTLDEIQF